MXO03495.5prime Sequence
679 bp (609 high quality bases) assembled on 2007-06-15
> MXO03495.5prime
CAGTCGACATGTCAGCTCAACTGGCCAGAAACTGGCCGTACATCTGGCAA
CAGCTCAATGCTCTGCTGCACAACACCTCGCCGGTCATAACGCTCATCTG
CGTGGTGACCACGTTCGGCTACCTGCTATCCTTCTCGGAGACGGCCATCC
TGCTGCTCAGCGTCACTCCCGGTTACATCCTGCCCAATGGCAAGTTCTGG
ATATGGACCGCCTTCACGTTCTGCTTCATCGAGCTGCACTGGTGGGAGGT
GGCCGTCGACGTGGTCACCGTCGGCCTGTGCGGCAAGATGCTGGAACCGC
TCTGGGGCCAGCTGGAGATGTTCAAGTTCTTCGCGCTGAGCAACTTTGGC
GTCTCGCTGCTGACCACTGTCTACTATTTGTTCTACTACATGGTCACCAA
GAACCCGACCATTCTCTTCGAGGTGCACATTCACGGCCTGGCCGGATACG
TGGCTGGCATCTGCGTAGCCGTACGCCAGATAATGCCCGATCACCTGATC
TTCAAGACGCGCTACGGACGTCTGACCAATAGGAACGTTCCCCTCACGGT
GCTCATCATGGCCATCATACTGTGGGCCATTGGCCTGCTAGATGGCACTT
ATCCGGCTATGTTCGCCTCCGGATCGCTGGTTTCTTGGATCTATCTCCGC
TTCTATCAACACCATCCCAATGGGCGTGG
MXO03495.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:39:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9536-PA | 1353 | CG9536-RA | 1..671 | 9..679 | 3355 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:12:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9536-RB | 1888 | CG9536-RB | 230..901 | 8..679 | 3360 | 100 | Plus |
| CG9536-RA | 1944 | CG9536-RA | 230..901 | 8..679 | 3360 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:12:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6476221..6476746 | 533..8 | 2630 | 100 | Minus |
| 2L | 23513712 | 2L | 6475656..6475804 | 679..531 | 745 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:12:58 has no hits.
MXO03495.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-06-29 15:39:18 Download gff for
MXO03495.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9536-PA | 1..671 | 9..679 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:59:26 Download gff for
MXO03495.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9536-RA | 224..901 | 1..679 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:45:30 Download gff for
MXO03495.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9536-RA | 224..901 | 1..679 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:45:30 Download gff for
MXO03495.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6475656..6475802 | 533..679 | 100 | <- | Minus |
| 2L | 6476222..6476752 | 1..532 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:59:26 Download gff for
MXO03495.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6475656..6475802 | 533..679 | 100 | <- | Minus |
| arm_2L | 6476222..6476752 | 1..532 | 99 | | Minus |
