MXO03502.5prime Sequence
886 bp (806 high quality bases) assembled on 2007-07-18
> MXO03502.5prime
CAGTCGACATGGGTCCCAGCCACATTCCTCCGCTGACCTACAAGGTCGTG
GCCGAGTGCTCCGTCTCCAAAGCCCGGGCGGGACTGATGACCCTAAGGCA
CAGCGAGGTAAACACCCCGGTCTTTATGCCCGTGGGCACTCAGGGAACCT
TGAAGGGCATCGTGCCGGACCAGCTCATCGAGCTGAACTGCCAGATTCTG
CTGGGGAACACCTATCACCTGGGCCTGAGGCCCGGAATCGAGACACTGAA
GAAAGCCGGTGGTCTGCACAAGTTTATGGGCTGGCCCAGGGCCATTCTAA
CAGATTCCGGTGGCTTTCAGATGGTTTCCCTGCTGCAGCTGGCCGAGATC
GATGAGCACGGTGTGAACTTCCGGTCGCCCTTTGACAACAGCCAGTGCAT
GCTGACGCCGGAGCACTCCATCGAAATCCAGAACGCCATTGGTGGGGATA
TTATGATGCAGCTGGATGATGTGGTCAAGACCACAACAACTGGCCCCCGG
GTGGAGGAGGCCATGGAGCGGACTATTCGCTGGGTGGATCGCTGCATAGA
GGCCCATGCCCGCGACGATGACCAGNTCGCTGTTCCCCATCGTCCAGGGA
GGATTGGATGTGCCGCTGCGTCAGCGTTGCGTTTCCGCTCTCATGGAGCG
CCAGGTTCGAGGCTTCGCCGTGGGCGGGCTAAGTGGTGGCGAGAGCAAGC
ACGACTTCTGGCGTATGGTGGACGTGTGCACTGGCTATCTGCCCAAGGAC
AAGCCGCGCTACCTGATGGGCGTGGGTTTTGCGGCGGATCTGGTGGTCTG
CGTGGCCCTGGGCATCGATATGTTCGACTGTGTCTTCCCACCCGGACAGC
TCGATTTGGGTGCGCCCTGGTGGACAGTGGGCAGCT
MXO03502.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:37:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4947-PA | 1284 | Tgt-RA | 1..567 | 9..575 | 2835 | 100 | Plus |
| CG4947-PA | 1284 | Tgt-RA | 568..830 | 577..839 | 1315 | 100 | Plus |
| CG4947-PA | 1284 | Tgt-RA | 829..878 | 837..886 | 225 | 98 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:26:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tgt-RA | 1566 | CG4947-RA | 102..979 | 9..886 | 4330 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:26:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 1184321..1185111 | 96..886 | 3845 | 99.6 | Plus |
| 2L | 23513712 | 2L | 1184166..1184255 | 9..98 | 450 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:26:37 has no hits.
MXO03502.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:37:25 Download gff for
MXO03502.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4947-PA | 1..878 | 9..886 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:49:42 Download gff for
MXO03502.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tgt-RA | 96..979 | 1..886 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:08:41 Download gff for
MXO03502.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tgt-RA | 96..979 | 1..886 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:08:41 Download gff for
MXO03502.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 1184160..1184254 | 1..97 | 95 | -> | Plus |
| 2L | 1184323..1185111 | 98..886 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:49:42 Download gff for
MXO03502.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 1184160..1184254 | 1..97 | 95 | -> | Plus |
| arm_2L | 1184323..1185111 | 98..886 | 99 | | Plus |
