MXO03503.5prime Sequence
862 bp (773 high quality bases) assembled on 2007-07-18
> MXO03503.5prime
CAGTCGACATGGCCCAGAACACGGCCGACACTCTCATCCACCTGATCGCC
GGCGGATCCGCTGGCACAGTGGGTGCCGTTGTCACATGCCCCCTGGAGGT
GGTGAAGACTCGCCTGCAGAGCTCCACGGCGTTCATGACGCCGTCGCGGC
TGGCGGAGAATGCCGGAGGAGGACCGGCGAACGGTGGCCAATCGGAGCTG
CTGCGGCCGGAACAACGACGTAAGCTAAGCACAACGATATTACGTAACAG
ATCACAGCCACAGGTGATTGGGGGTGTGCGTAGGATCATGGCCATTTCAC
ACTGCGGCATCTCATCCACAACGCCCAAATCCATGAGCATCGTGCAGTGC
CTGCGGCACATTGTCCAGAACGAGGGTCCACGCGCCCTGTTCAAGGGTCT
GGGTCCGAATCTCGTGGGCGTGGCCCCATCCCGTGCCATTTACTTCTGCA
CCTACTCGCAAACCAAAAACACGCTCAACAGTCTGGGCTTTGTTGAACGT
GACTCGCCACTGGTGCACATCATGAGTGCAGCGAGTGCCGGCTTTGTCTC
CTCCACGGCAACGAATCCCANTTTGGTTTGTGAAGACGCGAATGCAGCTN
GGACTACAACTCCAAGGTGCAGATGACCGTGAGGCAGTGCATCGAGAGGG
TGTACGCCCAGGGAGGCGTGGCGGCCTTCTACAAGGGCATCACGGCCAGC
TACTTTGGAATCTGCGAGACGATGGTGCACTTTGTCATCTACGAGTTTAT
CAAGTCCAAGTTGCTAGAGCAGCGAAATCAGCGGCATACGGACACCAAGG
GATCCCGCGACTTTCTGGAGTTCATGATGGCTGGCGCTGTTTCCAAACCA
TCGCCTCCTGCA
MXO03503.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:37:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18317-PA | 1098 | CG18317-RA | 1..562 | 9..570 | 2810 | 100 | Plus |
| CG18317-PA | 1098 | CG18317-RA | 591..837 | 601..847 | 1235 | 100 | Plus |
| CG18317-PA | 1098 | CG18317-RA | 563..590 | 572..599 | 140 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:32:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rim2-RA | 1762 | CG18317-RA | 461..1313 | 9..862 | 4200 | 99.6 | Plus |
| Rim2-RC | 2396 | CG18317-RC | 461..1292 | 9..862 | 3875 | 97.2 | Plus |
| Rim2-RD | 2352 | CG18317-RD | 672..1248 | 285..862 | 2820 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:32:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 1717878..1718152 | 763..487 | 1285 | 99.3 | Minus |
| 2L | 23513712 | 2L | 1718675..1718904 | 284..55 | 1150 | 100 | Minus |
| 2L | 23513712 | 2L | 1718227..1718359 | 487..355 | 665 | 100 | Minus |
| 2L | 23513712 | 2L | 1717716..1717816 | 862..763 | 455 | 99 | Minus |
| 2L | 23513712 | 2L | 1718420..1718492 | 356..284 | 365 | 100 | Minus |
| 2L | 23513712 | 2L | 1723882..1723928 | 55..9 | 235 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:32:05 has no hits.
MXO03503.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:37:30 Download gff for
MXO03503.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18317-PA | 1..852 | 9..861 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:51:58 Download gff for
MXO03503.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18317-RA | 453..1312 | 1..861 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:09:45 Download gff for
MXO03503.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rim2-RA | 453..1312 | 1..861 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:09:45 Download gff for
MXO03503.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 1718227..1718358 | 356..487 | 100 | <- | Minus |
| 2L | 1718421..1718491 | 285..355 | 100 | <- | Minus |
| 2L | 1718675..1718903 | 56..284 | 100 | <- | Minus |
| 2L | 1723882..1723936 | 1..55 | 92 | | Minus |
| 2L | 1717878..1718151 | 488..763 | 99 | <- | Minus |
| 2L | 1717717..1717815 | 764..861 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:51:58 Download gff for
MXO03503.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 1717717..1717815 | 764..861 | 98 | <- | Minus |
| arm_2L | 1717878..1718151 | 488..763 | 99 | <- | Minus |
| arm_2L | 1718227..1718358 | 356..487 | 100 | <- | Minus |
| arm_2L | 1718421..1718491 | 285..355 | 100 | <- | Minus |
| arm_2L | 1718675..1718903 | 56..284 | 100 | <- | Minus |
| arm_2L | 1723882..1723936 | 1..55 | 92 | | Minus |
