MXO03506.5prime Sequence
855 bp (796 high quality bases) assembled on 2007-07-18
> MXO03506.5prime
CAGTCGACATGTCGGTCAGACTGAACGAGACGACGACCATTGTTGACCGG
ATGGTCAACTTCTTCGTGGAGCACGAGGATCTGCGCACCAAGCAATGGTT
CCTTTCGAATGCCCCCGGACCGCTGTTCATGATCCTTGGAGCCTACCTGT
ACTTCTGCCTGTACGCAGGACCTCGTTACATGCGCGATCGCAAGCCCTTC
GAGCTGAAGAACACTCTCCTGGTCTACAATGCGGTCCAAGTGCTCCTCAG
CTGGGTGCTCTTCTACGAGGGATACAAGGGCGGCTGGGGTGGCCACTACA
ACTTCAAGTGCCAGCCGGTGACTTACGAATCGGATCCGATTTCCATGAGG
ATGGCTCGTGCCGTGTGGCTGTACTACATTGCCAAGATCACGGAGCTGTT
GGACACCGTGTTCTTTGTGCTGCGCAAGAAACAGCGCCAGATCTCCTTCC
TCCACTTGTACCACCACACTCTGATGCCCGTGTGTGCCTTCATTGGGGTC
AAGTACTTTGCCGGTGGCCATGGAACCCTTCTGGGATTCATTAACTCCTT
CATCCACATCATTATGTACGCCTACTACCTNGCTCTCCGCGATGGGACCC
AAGGTGCAAAAGTATCTGTGGTGGAAGAAGTACATCACCATCCTGCAGAT
TGTCCAATTCCTGATCATCTTCGTGCACACACTGCAAATCCAGTTCCAGC
CCAACTGCAACTTCCCCAAGTCCATTGCCGCACTCCTGACCTTCAATGCT
GGACTCTTCACCTATATGTTCAGCGCCTTCTATGTGGCCAACTACAAGAA
GGAGGCGGCTGCCCAGGCCAAGCTGGCGGCGAAAAGGAGGCAAGCTTTCT
AGACC
MXO03506.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:37:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5326-PA | 834 | CG5326-RA | 1..572 | 9..580 | 2860 | 100 | Plus |
| CG5326-PB | 372 | CG5326-RB | 1..342 | 9..350 | 1710 | 100 | Plus |
| CG5326-PA | 834 | CG5326-RA | 573..826 | 582..835 | 1270 | 100 | Plus |
| CG5278-PA | 888 | CG5278-RA | 586..626 | 610..650 | 180 | 97.5 | Plus |
| CG2781-PA | 990 | CG2781-RA | 571..612 | 592..633 | 160 | 95.2 | Plus |
| CG16904-PA | 789 | CG16904-RA | 350..404 | 400..454 | 150 | 90.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:13:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5326-RA | 1694 | CG5326-RA | 320..1145 | 9..835 | 4110 | 99.9 | Plus |
| CG5278-RA | 1722 | CG5278-RA | 526..804 | 381..660 | 404 | 77.3 | Plus |
| CG2781-RA | 1974 | CG2781-RA | 921..1042 | 511..633 | 270 | 83.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:13:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22532967..22533269 | 653..350 | 1470 | 99.7 | Minus |
| 3R | 32079331 | 3R | 22533336..22533595 | 350..91 | 1300 | 100 | Minus |
| 3R | 32079331 | 3R | 22532723..22532906 | 835..652 | 920 | 100 | Minus |
| 3R | 32079331 | 3R | 22533684..22533767 | 92..9 | 420 | 100 | Minus |
| 3R | 32079331 | 3R | 22559611..22559879 | 650..381 | 374 | 76.7 | Minus |
| 3R | 32079331 | 3R | 7982865..7982954 | 633..543 | 240 | 86.8 | Minus |
| 3R | 32079331 | 3R | 9813349..9813433 | 383..467 | 215 | 83.5 | Plus |
| 3R | 32079331 | 3R | 9816469..9816540 | 467..396 | 210 | 86.1 | Minus |
Blast to na_te.dros performed 2014-11-28 20:13:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dmir\worf | 4174 | Dmir\worf WORF 4174bp Derived from AY144572. | 814..889 | 653..729 | 121 | 65.4 | Plus |
MXO03506.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:37:44 Download gff for
MXO03506.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5326-PA | 1..834 | 9..840 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:26:09 Download gff for
MXO03506.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5326-RA | 312..1158 | 1..845 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:55:09 Download gff for
MXO03506.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5326-RA | 312..1158 | 1..845 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:55:09 Download gff for
MXO03506.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22532969..22533268 | 351..651 | 99 | <- | Minus |
| 3R | 22532710..22532906 | 652..845 | 97 | <- | Minus |
| 3R | 22533336..22533593 | 93..350 | 100 | <- | Minus |
| 3R | 22533684..22533775 | 1..92 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:26:09 Download gff for
MXO03506.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18358432..18358628 | 652..845 | 97 | <- | Minus |
| arm_3R | 18358691..18358990 | 351..651 | 99 | <- | Minus |
| arm_3R | 18359058..18359315 | 93..350 | 100 | <- | Minus |
| arm_3R | 18359406..18359497 | 1..92 | 96 | | Minus |
