MXO03511.5prime Sequence
851 bp (768 high quality bases) assembled on 2007-07-18
> MXO03511.5prime
CAGTCGACATGATGCAAATAATACTGCCTCTTTTTGTGCTGACTGCCTCA
TGTCTTGGCAGTCCGGTGAGCCAAACCCGTCGATTCCCCAACGACTTTCT
CTGGGGCGTTGGATCATCTTCATACCAAATCGAAGGCGGCTGGAACGCGG
ATGACAAGGGGGAGTCGATCTGGGACTTTCTCACCCACACTCATCCCGAG
AAAATAGTCGATCGATCCAATGGCGATGTCTCGGCGGACAGCTATCATCA
GTGGAAGCGCGATGTGCAAATGGTCAAGGAGCTGCACGTGGGCACCTATC
GCTTCTCCCTGTCCTGGCCACGAATTATGCCCGGTGGCTATATGAACCAC
GTCAGTACAGCCGGCATTAAGTACTATTCCAACCTGATCGACGAACTGCT
GCGGTACAACATCACTCCGATGGTGACGATCTATCACTGGGAATTGCCGC
AGAAGTTGCAGGAGCTGGGTGGCTGGACCAATCCGGAGATAATTCCGCTT
TTCAAGGACTATGCTCGCCTGGTGCTGGAAATGTACGGAGATCGGGTGAA
GATCTGGACCACCGTCAATGAGCCGTGGCATGTGTGTGAGCACGGTTACG
GAGTGGATTATATGGCACCTTCGTACAACTATCCAGGCATTCCCGCCTAC
CTCTGTGGTCACAATCTGCTGAAGGCTCACGCCGAGGTGGTGCACATGTA
CCGGGAGCTCTTCCAGCCGCGTCAAGGTGGACGCATGGGCATCACACTGG
ATACGTCGTGGCCAGAGCCCAAGGATCCCAACTCCGCCGAGGATCGTGAG
GCCTCCGAGCGAGCCATGCAGTTCTATGTAGGCTGGTTCGGTCATCCCAT
C
MXO03511.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:38:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9701-PA | 1626 | CG9701-RA | 1..843 | 9..851 | 4190 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:05:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9701-RA | 2005 | CG9701-RA | 213..1057 | 7..851 | 4210 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:05:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16737222..16737824 | 249..851 | 3000 | 99.8 | Plus |
| 3L | 28110227 | 3L | 16734422..16734623 | 50..251 | 1010 | 100 | Plus |
| 3L | 28110227 | 3L | 16733758..16733800 | 7..49 | 215 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:05:59 has no hits.
MXO03511.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:38:07 Download gff for
MXO03511.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9701-PA | 1..843 | 9..851 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:52:18 Download gff for
MXO03511.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9701-RA | 213..1057 | 7..851 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:36:16 Download gff for
MXO03511.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9701-RA | 213..1057 | 7..851 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:36:16 Download gff for
MXO03511.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16733758..16733800 | 7..49 | 100 | -> | Plus |
| 3L | 16734422..16734623 | 50..251 | 100 | -> | Plus |
| 3L | 16737225..16737824 | 252..851 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:52:18 Download gff for
MXO03511.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16726858..16726900 | 7..49 | 100 | -> | Plus |
| arm_3L | 16727522..16727723 | 50..251 | 100 | -> | Plus |
| arm_3L | 16730325..16730924 | 252..851 | 99 | | Plus |
