MXO03513.5prime Sequence
877 bp (826 high quality bases) assembled on 2007-07-18
> MXO03513.5prime
CAGTCGACATGGGTCGCCTGTTCCAATACAATCGCTTTGGCGCCACGGAT
GGCATCAACAAAAACACCAGCAAAAAGGATACTCAGCAAAAGAACAAAAT
GCTACGCAATGCCATCAAATGTCCTGGCTACTCGGACATCTATGGTCAGT
ACAATAAGGACTCGTCCTTCGAGAAGTGCGATGAATGGAGCAACAAGCTG
CAATTCCCAGCCGCCGGAGAAATGGATAAACAGGAACCGATCCAGAGTCG
CACGCACAAGGTCTACGACAGCATGAAGAGTTTTCTGCAGCGCAAACTCT
TCGCGCAACCCTCGCATAAAGAGCAGATCTTAAACGAAGAACCCACAAGC
GACTATGATGAGGACCTTCTCGACTCCTCGTACCACGCCGACGCGGAAGA
AGAGGAGGAGGAACGCGATGCGGACTGCAGCTGCAGCTCCACCGGCAGTA
GCAGCACCAGCAGCAGCAGCCCAACCACGCCGAAACGATCACCCCAAAAG
TCCCTGCTGTCCCTCAACTGCTGGCAGAGCAGTCAGCCAAGCAGTGACTC
CAATCCCGAAGAGGAGCAGGATGAGGAGGCAGAAGAGGACTCCGACGCTG
GAATCTCCGATTGCTGTCAACTCTTAGCTGAGAATTCCCCCAACACCATG
AGCAAACGCCGTCGAGCTGCACCTCTATTCACCAGATACATCAGCGCCAA
CCAGAACTCCGACGATGATGAGGACGAGGAGCCGGAGCTCCTGGCGTGTC
CCTGGTATCAGCCCAGGATCACGGCCAAGGCAGCTTTGGAGCACCTGCAG
CAGGCCACACCTGGAAGCTTTCTTCTGCGACGCAGTACGCCGCGACATTT
CAAACTGGTCCTGCGACTCGAGAGGAA
MXO03513.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:38:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10479-PA | 1137 | CG10479-RA | 1..869 | 9..877 | 4320 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:06:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10479-RA | 1673 | CG10479-RA | 271..1139 | 9..877 | 4330 | 99.9 | Plus |
| CG10479-RB | 1676 | CG10479-RB | 271..1142 | 9..877 | 4290 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:06:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 5968079..5968595 | 877..361 | 2570 | 99.8 | Minus |
| 3L | 28110227 | 3L | 5968813..5969075 | 363..101 | 1315 | 100 | Minus |
| 3L | 28110227 | 3L | 5975645..5975737 | 101..9 | 465 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:06:12 has no hits.
MXO03513.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:38:12 Download gff for
MXO03513.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10479-PA | 1..867 | 9..875 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:52:24 Download gff for
MXO03513.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10479-RA | 266..1139 | 2..877 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:36:20 Download gff for
MXO03513.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10479-RA | 266..1139 | 2..877 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:36:20 Download gff for
MXO03513.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 5968814..5969074 | 102..362 | 100 | <- | Minus |
| 3L | 5975645..5975742 | 2..101 | 96 | | Minus |
| 3L | 5968079..5968593 | 363..877 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:52:24 Download gff for
MXO03513.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 5961914..5962174 | 102..362 | 100 | <- | Minus |
| arm_3L | 5968745..5968842 | 2..101 | 96 | | Minus |
| arm_3L | 5961179..5961693 | 363..877 | 99 | <- | Minus |
