MXO03514.5prime Sequence
830 bp (735 high quality bases) assembled on 2007-07-18
> MXO03514.5prime
CAGTCGACATGTTCACCAAGTCAATGCTGAGCTTCTCCCTGGTCGTGGCC
CTCTTCGTTGTCTGCCACGCCAGTCCCGTTCCGGATAATAATGGCCGGAG
TGGTTCGCAAGAAAGTATAGGTCGCTATCATCACATGCCGATTCCCTACA
GACATGTGAGCGATCAGCGTGAGCTTGGAAAATACCATCACATTCCCTAT
CCCTATGACGGAGGCTATGGACCCTACGCTGGTTCAAATATTCCCTATGT
CCATGACGACAGGCCTTACAACCACGACCTGTACACAAGCACGACCACCA
AGAAACCAACCACGACCACCAAAAGGACGACAACCTCGACCACCACCACC
ACCACCACGCCCCGCAATATTCTGTTCAACTACGATGATGAGGGTCGCCA
CAAGATCCTGCACAAGGAAGAGGTCCGCAAACAGGACAAATACGATCACT
CTTACCTGACTGAGAATGGAATCTATGGCGAGGAGCAGGCCAAGCTTCAC
CACACCGGAGGCACACATGCCAAGGGATTCTATGAGTACACCGGTGACGA
TGGCAAGCTTTATCGCGTAAACTACGCCTCCAACGATGGCGGCTTCATGC
CCCAGGGAGACCACATTCACCCGATCCCCGATGCCATTGTCCGTGCCCTC
AAGTACGTGGAGGAGCAGCACAAGATCAACGGTGGGGCTCAGTTCGACCA
TCGCGGCTTCCGCATCAATCACATGACCAAGGACCTTAAGGCGCACATCA
AGGCGATCCATCTGGAGGAGATGCCCAATGAGCTGACCGAGCAGATCCAT
ATGCTGGAGCACGAGGTGGAGCTCGCCGAG
MXO03514.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:38:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8502-PA | 885 | CG8502-RA | 1..822 | 9..830 | 4035 | 99.6 | Plus |
| CG8502-PC | 975 | CG8502-RC | 175..912 | 93..830 | 3615 | 99.5 | Plus |
| CG8502-PC | 975 | CG8502-RC | 1..87 | 9..95 | 435 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:01:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpr49Ac-RA | 1344 | CG8502-RA | 96..919 | 7..830 | 4075 | 99.6 | Plus |
| Cpr49Ac-RC | 1434 | CG8502-RC | 272..1009 | 93..830 | 3645 | 99.6 | Plus |
| Cpr49Ac-RE | 1317 | CG8502-RE | 96..892 | 7..830 | 3620 | 96.4 | Plus |
| Cpr49Ac-RC | 1434 | CG8502-RC | 96..184 | 7..95 | 445 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:01:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12389254..12389632 | 452..830 | 1865 | 99.5 | Plus |
| 2R | 25286936 | 2R | 12388923..12389086 | 288..451 | 820 | 100 | Plus |
| 2R | 25286936 | 2R | 12388298..12388450 | 119..271 | 750 | 99.3 | Plus |
| 2R | 25286936 | 2R | 12387381..12387429 | 47..95 | 245 | 100 | Plus |
| 2R | 25286936 | 2R | 12387055..12387096 | 7..48 | 210 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:01:04 has no hits.
MXO03514.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:38:17 Download gff for
MXO03514.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8502-PA | 1..822 | 9..830 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:53:12 Download gff for
MXO03514.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr49Ac-RA | 90..919 | 1..830 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:39:51 Download gff for
MXO03514.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr49Ac-RA | 90..919 | 1..830 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:39:51 Download gff for
MXO03514.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12387049..12387095 | 1..47 | 93 | -> | Plus |
| 2R | 12387382..12387427 | 48..93 | 100 | -> | Plus |
| 2R | 12387913..12387939 | 94..120 | 100 | -> | Plus |
| 2R | 12388300..12388450 | 121..271 | 99 | -> | Plus |
| 2R | 12388518..12388533 | 272..287 | 100 | -> | Plus |
| 2R | 12388923..12389086 | 288..451 | 100 | -> | Plus |
| 2R | 12389254..12389632 | 452..830 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:53:12 Download gff for
MXO03514.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8274554..8274600 | 1..47 | 93 | -> | Plus |
| arm_2R | 8274887..8274932 | 48..93 | 100 | -> | Plus |
| arm_2R | 8275418..8275444 | 94..120 | 100 | -> | Plus |
| arm_2R | 8275805..8275955 | 121..271 | 99 | -> | Plus |
| arm_2R | 8276023..8276038 | 272..287 | 100 | -> | Plus |
| arm_2R | 8276428..8276591 | 288..451 | 100 | -> | Plus |
| arm_2R | 8276759..8277137 | 452..830 | 99 | | Plus |
