MXO03515.5prime Sequence
734 bp (141 high quality bases) assembled on 2007-07-18
> MXO03515.5prime
CAATCCACATGTTCAAGTTCGCTTTGACCCTGACGCTCTGCTTGGCGGGA
AGCCTTTCGCTGGCCCATCACAATCCCCATTGGTGGGGCAATCGCAACAC
CATCGTCCACTTGTTCGAGTGGAAGTGGTACGGACATTGCCCACGAGTGT
GAGAGTTTTCTCGGACCTCGAGGATTCTCCGGCGTTCAAGTGAGCCCCGT
TAATGACAACATCTTATCGGCGGGTCGTCCATGGTGGGAGCGATATCAAC
CCATCTCGTACAAGCTGACCACTCGGTCTGGAAATGAGGAGGAATTTGGT
GACATGGTCCGTCTTTGCAACGATGTGGGTGTTCGAATCTATGTGGATGT
GCTGATGAACCACATGTCCGGATATTTTGACGGTGTGACTGTGGGCACTG
CTGGAACAGAGGCAGAACCCAATAACAAATCCTTCCCAGGAGTTCCATAC
ACCGCACAGGACTTCCATCCCACCTGCCATATTACCGACTGGAACAATCG
CTTCCAGGTGCAACAGTGCGAACTGATTGGACTCTAGGATCTTGACCAAG
CACCGACTGGGTGAGGAACAAGCTAATTGAGTTCCTGCATCACCTCATCT
AACTGGGTGTTGCTGGCTTCCGGGTGGATGCCACCAAGCATATGGCATCT
GAATATCTAGAGTACATCTACAGCAGCCTGAGCAACCTGAACATCTATCA
AGGCTTTCCTCACAACTCCCGTCCCTTCATCTTC
MXO03515.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:38:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8221-PA | 1482 | Amyrel-RA | 122..539 | 131..548 | 1615 | 95.4 | Plus |
| CG8221-PA | 1482 | Amyrel-RA | 546..726 | 554..734 | 705 | 95.5 | Plus |
| CG8221-PA | 1482 | Amyrel-RA | 1..121 | 9..129 | 555 | 98.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:44:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Amyrel-RA | 1549 | CG8221-RA | 2..728 | 8..734 | 3140 | 95.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:44:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16652044..16652698 | 662..8 | 2760 | 95.4 | Minus |
| 2R | 25286936 | 2R | 16651916..16651989 | 734..661 | 340 | 97.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:44:09 has no hits.
MXO03515.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:38:23 Download gff for
MXO03515.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8221-PA | 1..726 | 9..734 | 95 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:40:41 Download gff for
MXO03515.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Amyrel-RA | 2..728 | 8..734 | 95 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:13:17 Download gff for
MXO03515.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Amyrel-RA | 2..728 | 8..734 | 95 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:13:17 Download gff for
MXO03515.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16651916..16651987 | 663..734 | 97 | <- | Minus |
| 2R | 16652044..16652698 | 8..662 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:40:41 Download gff for
MXO03515.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12539421..12539492 | 663..734 | 97 | <- | Minus |
| arm_2R | 12539549..12540203 | 8..662 | 95 | | Minus |
