MXO03516.5prime Sequence
864 bp (718 high quality bases) assembled on 2007-07-18
> MXO03516.5prime
CAGTCGACATGGATCATCGTGTTTTCCTGTCGCTGATCTTTGTGCTCAGC
GGCACCTTCAACGTTCTGGTGGTGAAGTGGGCCAATCAACAACAGGTAAT
CGGCAGCGATGGAAAACTTCATGGATTTCAACATCCAGTGGTGTTCACAC
TGCTCATGTTCCTGGGCGAGTTCCTGTGCTTTGCGGTCTTCAAGGTGATC
CGCCTGATCTCCAATCGTCGTGGAGTTATATCCGATCTGGATAGCATCTT
GTCGCAGGACAGCAGTGAGTTCCGCCCTGTTAGCATGCTATTGCCCACTT
TGCTGGATGCGGCAGCCTCCATTCTGTTGTTCACCGGACTTTACTTGACT
TACGCCACCAGCTTTCAGATGATAAGAGGCGCCGCCCTGATCTTTGTGGG
CATCTTTAGCACCATGTTTCTGAATCACACGCTGACCGGACGGCACTGGC
TGGCCATCTTTACGATATCGTGCGGCCTGCTGGACATTATCAGTCTGGAC
GTCCATCGCGTTGAATACGACCTGGTCACGTTGCCTTACACGGACTACAA
ATCCATTCTGACCGGCGACTTACTCATCATCATTGCTGAAATTCTGCACG
GACTGCAATATGTTTGCGAGGAGAAACAGCTAAAAACCTCGAATGTTGCT
CCACTGCAAGCTGCTGGCTGGCAGGGAATCTTCGGCTTGGGCATCACCTC
GATGCTGGCCATTTGCATGAACTTCCTGCCGAGCATTGATCCATTTAGCT
GTAGTTCGCGTGCAGTTTTCGACGATTGGGGTGATCTCTTTGCGGCTCTG
CAGGGGAGTATCTCATTGATTATGACTCTGATTGCCTTCACCATCTCATG
TGCCATGTACAACT
MXO03516.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:38:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10007-PA | 1146 | CG10007-RA | 1..856 | 9..864 | 4280 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:36:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tango9-RB | 3673 | CG10007-RB | 298..1153 | 9..864 | 4280 | 100 | Plus |
| Tango9-RA | 1590 | CG10007-RA | 298..1153 | 9..864 | 4280 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:36:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11973527..11974014 | 864..377 | 2440 | 100 | Minus |
| 3R | 32079331 | 3R | 11974073..11974227 | 379..225 | 775 | 100 | Minus |
| 3R | 32079331 | 3R | 11974308..11974457 | 226..77 | 750 | 100 | Minus |
| 3R | 32079331 | 3R | 11974543..11974613 | 79..9 | 355 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 22:36:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gypsy2 | 6841 | gypsy2 GYPSY2 6841bp | 1256..1294 | 815..853 | 114 | 76.9 | Plus |
MXO03516.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:38:34 Download gff for
MXO03516.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10007-PA | 1..856 | 9..864 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:47:46 Download gff for
MXO03516.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tango9-RA | 291..1153 | 1..864 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:13:23 Download gff for
MXO03516.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tango9-RA | 291..1153 | 1..864 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:13:23 Download gff for
MXO03516.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11973527..11974012 | 379..864 | 100 | <- | Minus |
| 3R | 11974074..11974227 | 225..378 | 100 | <- | Minus |
| 3R | 11974310..11974457 | 77..224 | 100 | <- | Minus |
| 3R | 11974546..11974619 | 1..76 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:47:46 Download gff for
MXO03516.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7799249..7799734 | 379..864 | 100 | <- | Minus |
| arm_3R | 7799796..7799949 | 225..378 | 100 | <- | Minus |
| arm_3R | 7800032..7800179 | 77..224 | 100 | <- | Minus |
| arm_3R | 7800268..7800341 | 1..76 | 96 | | Minus |
