MXO03518.5prime Sequence
851 bp (571 high quality bases) assembled on 2007-07-18
> MXO03518.5prime
CAGTCGACATGCCCCGGAACACGGAGGCGGGCGCCGGAAATGCGAATACC
GGTGGATCCGGCGGAGTAGGCGGTGCCCCCGAGCCCAGTTCTCCGGTTCA
GAAGGTTTGGAAGCCGGAATTGTACAAACTGCAGCTGGAGGCACCGGCTC
CATGTCCACTGCGCTGCCAACGAACACTTCCCCTTCCGCCGGCGAAAAGC
ACGGCTGAGGCCGTGGAGGCCAATAACTTGGCGGGCAGGCTATACGGCTC
CGAGTACCATGGCCTGATGGGCCACCTGGAGGCGGAGCAGCTGCTGGCCA
ATGCCCGCGACGGCAGCTACTTTGTACGCCGGAGCCCCCAATCCGATGGC
TACTACACGCTGAGCCTGCGCTTCAACAAGCGACCCAAGCACTACAAGCT
GCTCTATAAGCCCGGCGTGGGACACTATCTGCGCGGCCAGGACAAGCGCT
TCGACACGGTGCACGACATGGTCGCCGACGGGCTGATCAACTTTCACATG
CAGCTCCACGCCAGTCCCATCATCCAGCAGATTAATCAACAGACCAAGAA
CTGCTACCAGCAAAGCCCATACATGTACTTTAAATGGCCGGAAACTTAGC
GGCTCTGTCCAATGAGCTGGGCAAGGCCGCCGCCAAGGAATCGAAGGAAT
CGCCAGCCGAGGAGAAGGAGCAGAAGCAGGAGGAGCCACCGCCTCCAGCC
GTGGATCCCATGCCGCTGGTCTACGAGAAGCCGCATCACTTCTAGGTGCA
CACGTTTAAGGGGCTCAACTGGTGCGAGTTCTGCGCCAACTTCTTGTGGG
GATTCACCGCCCAGGGCGTCAAGTGTGAGGCGTGCGGCTTTGTGGCGCAC
A
MXO03518.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:38:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3208-PB | 1323 | RhoGAP5A-RB | 1..567 | 9..575 | 2685 | 98.9 | Plus |
| CG3208-PA | 1485 | RhoGAP5A-RA | 1..567 | 9..575 | 2685 | 98.9 | Plus |
| CG3208-PB | 1323 | RhoGAP5A-RB | 591..841 | 601..851 | 1205 | 99.2 | Plus |
| CG3208-PA | 1485 | RhoGAP5A-RA | 591..841 | 601..851 | 1205 | 99.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:32:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RhoGAP5A-RA | 1933 | CG3208-RA | 130..970 | 9..851 | 4030 | 98.7 | Plus |
| RhoGAP5A-RB | 1905 | CG3208-RB | 130..970 | 9..851 | 4030 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:32:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5617855..5618480 | 748..121 | 2920 | 98.4 | Minus |
| X | 23542271 | X | 5618566..5618677 | 120..9 | 560 | 100 | Minus |
| X | 23542271 | X | 5617681..5617788 | 851..744 | 525 | 99.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:32:18 has no hits.
MXO03518.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:38:47 Download gff for
MXO03518.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3208-PA | 1..840 | 9..850 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:52:02 Download gff for
MXO03518.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RhoGAP5A-RB | 123..969 | 2..850 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:09:53 Download gff for
MXO03518.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RhoGAP5A-RB | 123..969 | 2..850 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:09:53 Download gff for
MXO03518.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5617682..5617786 | 746..850 | 99 | <- | Minus |
| X | 5617858..5618480 | 121..745 | 98 | <- | Minus |
| X | 5618566..5618680 | 2..120 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:52:02 Download gff for
MXO03518.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5511715..5511819 | 746..850 | 99 | <- | Minus |
| arm_X | 5511891..5512513 | 121..745 | 98 | <- | Minus |
| arm_X | 5512599..5512713 | 2..120 | 96 | | Minus |
