MXO03521.5prime Sequence
866 bp (764 high quality bases) assembled on 2007-07-18
> MXO03521.5prime
CAGTCGACATGCGTCCGTTCTCCGGCAGCGATTGCCTTAAGCCCGTCACC
GAGGGCATCAACCGGGCGTTCGGCGCCAAGGAGCCTTGGCAGGTCGCCAC
CATCACGGCCACCACGGTGCTGGGAGGCGTCTGGCTCTGGACTGTGATCT
GCCAGGATGAAAATCTTTACATTCGTGGCAAGCGTCAGTTCTTTAAGTTT
GCCAAGAAGATTCCAGCCGTGCGTCGTCAGGTGGAGACTGAATTGGCCAA
GGCCAAAAACGACTTCGAGACGGAAATCAAAAAGAGCAACGCCCACCTTA
CCTACTCGGAAACTCTGCCCGAGAAGGGACTCAGCAAGGAGGAGATCCTC
CGACTGGTGGATGAGCACCTGAAGACTGGTCACTACAACTGGCGTGATGG
TCGTGTATCTGGCGCGGTCTACGGCTACAAGCCTGATCTGGTGGAGCTCG
TCACTGAAGTGTACGGCAAGGCCTCCTACACCAATCCCTTGCACGCAGAT
CTTTTCCCGGGAGTTTGCAAAATGGAGGCGGAGGTAGTGCGCATGGCATG
CAACCTGTTCCATGGAAACTCAGCCAGCTGTGGAACCATGACCACCGGCG
GCACCGAATCCATTGTAATGGCCATGAAGGCGTACAGGGATTTCGCTAGA
GAGTACAAGGGAATCACCAGGCCAAACATCGTGGTGCCTAAGACGGTCCA
CGCGGCCTTCGACAAGGGTGGTCAGTACTTTAATATCCACGTGCGATCCG
TGGATGTAGATCCGGAGACCTACGAAGTGGACATTAAGAAGTTCAAACGT
GCCATTAATAGGAACACGATTCTGCTGGTTGGGTCTGCTCCAAACTTCCC
CTATGGAACCATAAAT
MXO03521.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:38:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8946-PB | 1638 | Sply-RB | 1..854 | 9..862 | 4145 | 99.4 | Plus |
| CG8946-PA | 1638 | Sply-RA | 1..854 | 9..862 | 4145 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:34:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sply-RA | 2077 | CG8946-RA | 161..1014 | 9..862 | 4195 | 99.4 | Plus |
| Sply-RB | 2014 | CG8946-RB | 98..951 | 9..862 | 4195 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:34:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17089714..17090375 | 824..163 | 3280 | 99.7 | Minus |
| 2R | 25286936 | 2R | 17091359..17091512 | 162..9 | 740 | 98.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:34:35 has no hits.
MXO03521.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:38:58 Download gff for
MXO03521.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8946-PA | 1..858 | 9..866 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:07:47 Download gff for
MXO03521.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sply-RB | 92..955 | 1..866 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:03:08 Download gff for
MXO03521.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sply-RB | 92..955 | 1..866 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:03:08 Download gff for
MXO03521.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17089617..17089658 | 825..866 | 92 | <- | Minus |
| 2R | 17089714..17090375 | 163..824 | 99 | <- | Minus |
| 2R | 17091359..17091516 | 1..162 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:07:47 Download gff for
MXO03521.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12977122..12977163 | 825..866 | 92 | <- | Minus |
| arm_2R | 12977219..12977880 | 163..824 | 99 | <- | Minus |
| arm_2R | 12978864..12979021 | 1..162 | 96 | | Minus |
