MXO03522.5prime Sequence
753 bp (703 high quality bases) assembled on 2007-07-18
> MXO03522.5prime
CAGTCGACATGGCTTGCTATTACCGCCAGCATGCGGACACCACGGTGACG
GTTCCAAAGTTTAGCAACGAGAGTTCCAGCGGCGGAGTGACCTACTACGA
TATCAAGGTGCGAGTGGGCAAGGTGGAATGGCTGGTGGAGCGCCGTTATC
GGGACTTTGCAAATCTTCACGAGAAGCTGGTTGGCGAGATCTCCATCAGT
AAGAAGTTGCTGCCGCCGAAGAAGCTGGTTGGAAACAAGCAGCCCTCCTT
TTTGGAGCAACGTCGTGAACAGTTGGAAATTTATCTTCAGGAGCTTCTCA
TCTACTTCCGGACAGAACTGCCGCGAGCTCTGGCCGAGTTTCTGGACTTT
AACAAGTACGACATTATTTATCTGCTACAAGATCTTGCCAAGCTGTTCAA
TGAAAGCGGTGATGCTCTGCTCAGCTCCAAGAAGGAATACAACCTTTCAG
CCCTAGAGGTCTACGCTATCAGTGAGCGGCTTAGTCTTCCCTGCCCACCG
AGCCTGGATCGCGGTGGAAAGTACGACTTCTCGCACGTGCTGGACTTTTG
CACACAACTTGTCGCTTTGGTGGTCACCCCGGTCAAGGACAATGCTAGCT
ATGCCCAGGATTACAATACGGTTGATGTGCCAATCGATCGCAGCAATATT
ATTCCGAACAGACTAAGTTTTAATCTAAATGCCTTTCGCAATCTCAAGAC
GCTCAAATTTTCGGCCTTGTCTACCGAAAACATTGTGGACATCGAACTTC
TGA
MXO03522.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:39:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11807-PA | 1476 | CG11807-RA | 1..745 | 9..753 | 3650 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:44:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11807-RC | 1993 | CG11807-RC | 217..961 | 9..753 | 3680 | 99.6 | Plus |
| CG11807-RB | 2106 | CG11807-RB | 271..1015 | 9..753 | 3680 | 99.6 | Plus |
| CG11807-RA | 1945 | CG11807-RA | 110..854 | 9..753 | 3680 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:44:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 15203020..15203316 | 457..753 | 1470 | 99.7 | Plus |
| 2R | 25286936 | 2R | 15201892..15202129 | 223..460 | 1160 | 99.2 | Plus |
| 2R | 25286936 | 2R | 15201616..15201831 | 9..224 | 1080 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:44:22 has no hits.
MXO03522.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:39:05 Download gff for
MXO03522.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11807-PA | 1..744 | 9..752 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:40:46 Download gff for
MXO03522.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11807-RA | 105..853 | 1..752 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:13:23 Download gff for
MXO03522.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11807-RA | 105..853 | 1..752 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:13:23 Download gff for
MXO03522.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 15203022..15203315 | 459..752 | 99 | | Plus |
| 2R | 15201611..15201831 | 1..224 | 98 | -> | Plus |
| 2R | 15201894..15202127 | 225..458 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:40:46 Download gff for
MXO03522.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11089116..11089336 | 1..224 | 98 | -> | Plus |
| arm_2R | 11089399..11089632 | 225..458 | 99 | -> | Plus |
| arm_2R | 11090527..11090820 | 459..752 | 99 | | Plus |
