MXO03525.5prime Sequence
840 bp (839 high quality bases) assembled on 2007-07-18
> MXO03525.5prime
CAGTCGACATGTCCAAACGCCACCGCCTCACGCCCTTTACCATTGCCAAG
GAGCCAGAGGCCGCCATAGTCCCGCCACGCAACCTGGACTCGCGGGCCAC
CATCCAAATTGGCGACCGGACCTTTGACATCGATGCAGATAGTCTCGAGA
AGATCTGCGATCTGGGCCGTGGCGCCTATGGCATCGTGGATAAGATGCGC
CATAAGCAAACCGATACGGTCCTGGCCGTCAAACGCATACCCATGACCGT
AAATATTCGAGAACAGCACCGCCTTGTAATGGATTTGGACATATCGATGA
GATCCAGCGACTGCCCCTACACCGTCCACTTCTATGGTGCGATGTATCGC
GAGGGCGATGTCTGGATTTGCATGGAGGTGATGAGCACCAGCCTGGACAA
GTTCTATCCGAAGGTCTTCCTTCACGATCTGCGAATGGAGGAAAGCGTGC
TGGGCAAGATTGCCATGAGCGTGGTCAGTGCGCTGCACTATCTGCACGCT
CAACTGAAAGTCATTCATCGGGACGTCAAGCCCTCGAACATACTGATCAA
TCGGGCCGGCCAGGTCAAGATCTGTGACTTTGGCATCTCAGGCTACCTCG
TCGACTCCATTGCCAAAACCATTGATGCCGGTTGCAAGCCGTACATGGCG
CCGGAACGGATCGATCCCCAAGGAAATCCGGCGCAATACGACATCAGGTC
GGATGTTTGGTCGCTGGGCATCGGCATGATCGAAATGGCCACGGGCCGCT
ACCCATACGACAATTGGCGAACGCCATTTGAGCAACTGCGTCAGGTGGTT
GAGGACAGTCCGCCGCGCCTGCCGGAGGGAACATTTTCGC
MXO03525.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:39:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12244-PA | 1005 | lic-RA | 1..832 | 9..840 | 4135 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:44:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lic-RA | 1951 | CG12244-RA | 339..1170 | 9..840 | 4145 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:44:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 13091612..13092002 | 68..458 | 1940 | 99.7 | Plus |
| X | 23542271 | X | 13092282..13092489 | 590..797 | 1040 | 100 | Plus |
| X | 23542271 | X | 13092087..13092222 | 457..592 | 680 | 100 | Plus |
| X | 23542271 | X | 13091483..13091541 | 9..67 | 295 | 100 | Plus |
| X | 23542271 | X | 13093158..13093205 | 793..840 | 240 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:44:35 has no hits.
MXO03525.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:39:15 Download gff for
MXO03525.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12244-PA | 1..832 | 9..840 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:40:51 Download gff for
MXO03525.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lic-RA | 339..1170 | 9..840 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:13:29 Download gff for
MXO03525.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lic-RA | 339..1170 | 9..840 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:13:29 Download gff for
MXO03525.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 13091483..13091541 | 9..67 | 100 | -> | Plus |
| X | 13091612..13092002 | 68..458 | 99 | -> | Plus |
| X | 13092089..13092221 | 459..591 | 100 | -> | Plus |
| X | 13092284..13092486 | 592..794 | 100 | -> | Plus |
| X | 13093160..13093205 | 795..840 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:40:51 Download gff for
MXO03525.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 12985516..12985574 | 9..67 | 100 | -> | Plus |
| arm_X | 12985645..12986035 | 68..458 | 99 | -> | Plus |
| arm_X | 12986122..12986254 | 459..591 | 100 | -> | Plus |
| arm_X | 12986317..12986519 | 592..794 | 100 | -> | Plus |
| arm_X | 12987193..12987238 | 795..840 | 100 | | Plus |
