MXO03526.5prime Sequence
872 bp (836 high quality bases) assembled on 2007-07-18
> MXO03526.5prime
CAGTCGACATGCAGAAGGTTGCACTGCTTCTAGTCGCCTTCCTGGCTGCG
GCCGTGGCCCACCCAAATTCGCAGGAGAAGCCCGGATTGCTGCGCGTACC
GCTCCACAAATTTCAGTCGGCCCGCCGGCACTTTGCGGATGTGGGCACGG
AGCTGCAGCAATTGCGCATTAGGTACGGCGGAGGTGATGTGCCGGAACCG
CTGTCCAACTATATGGACGCGCAGTACTATGGGCCCATTGCCATTGGCTC
GCCACCGCAGAACTTCCGTGTGGTTTTCGACACCGGCTCCTCGAACTTGT
GGGTGCCGTCCAAGAAGTGCCACCTGACCAACATCGCCTGTTTGATGCAC
AACAAGTACGATGCCTCCAAGTCGAAGACCTACACCAAGAACGGCACTGA
GTTCGCCATCCAGTATGGCTCGGGCAGCTTGTCCGGATACCTGTCCACGG
ATACGGTGTCCATTGCCGGCCTGGACATCAAGGATCAGACATTCGCTGAG
GCGCTCAGTGAGCCGGGCCTGGTCTTCGTAGCTGCCAAGTTCGACGGCAT
CCTAGGCCTGGGCTACAACTCCATCTCGGTGGACAAGGTGAAGCCGCCAT
TTTACGCCATGTACGAACAGGGTTTGATCTCCGCTCCGGTGTTCTCATTC
TACCTGAATCGCGATCCCGCCTCGCCCGAGGGCGGTGAGATCATCTTTGG
CGGCTCCGATCCCAACCACTACACTGGTGAATTCACCTACTTGCCCGTTA
CCCGCAAGGCCTACTGGCAAATCAAGATGGATGCCGCCTCCATTGGCGAT
TTGCAGCTGTGCAAGGGCGGTTGCCAGGTGATCGCTGACACCGGTACCTC
ACTAATTGCTGCGCCCTTGGAA
MXO03526.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:39:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1548-PA | 1179 | cathD-RA | 1..864 | 9..872 | 4320 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:44:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cathD-RA | 1396 | CG1548-RA | 104..967 | 9..872 | 4320 | 100 | Plus |
| CG6508-RA | 1379 | CG6508-RA | 418..513 | 407..502 | 195 | 80.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:44:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7822603..7823466 | 872..9 | 4320 | 100 | Minus |
| 2L | 23513712 | 2L | 10819524..10819619 | 407..502 | 195 | 80.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:44:47 has no hits.
MXO03526.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:39:21 Download gff for
MXO03526.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1548-PA | 1..862 | 9..870 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:40:54 Download gff for
MXO03526.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cathD-RA | 96..967 | 1..872 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:13:38 Download gff for
MXO03526.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cathD-RA | 96..967 | 1..872 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:13:38 Download gff for
MXO03526.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7822603..7823472 | 1..872 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:40:54 Download gff for
MXO03526.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3710108..3710977 | 1..872 | 99 | | Minus |
