MXO03527.5prime Sequence
829 bp (827 high quality bases) assembled on 2007-07-18
> MXO03527.5prime
CAGTCGACATGCGATTTATGCTGCTCATGCTGCAGCTGCTCGGCCTGCTG
CTCCTCCTCGCCGGCGGAGTGCAGTCCGTCTACTGTCCGGCTGGATGCAC
CTGCTTGGAGCGAACCGTGCGCTGCATCCGCGCCAAGCTGTCCGCCGTGC
CGAAACTGCCCCAGGATACACAAACGCTAGATTTGCGTTTCAATCACATC
GAGGAGCTGCCGGCCAACGCGTTCAGTGGTCTCGCCCAGCTGACTACGCT
TTTTCTGAACGACAACGAGCTGGCTTACCTGCAGGATGGGGCTCTCAATG
GACTGACGGCGCTGAGGTTCGTCTATCTGAACAATAATCGGCTAAGCCGC
TTACCGGCGACCATCTTCCAGCGGATGCCGCGCCTGGAGGCGATTTTCCT
GGAAAACAATGACATTTGGCAGCTGCCCGCCGGGCTCTTTGACAACTTGC
CGCGTCTGAATCGCCTGATCATGTACAACAACAAGCTGACCCAACTGCCT
GTGGACGGATTCAATCGACTGAACAACCTGAAGCGCCTGCGACTGGACGG
CAACGCCATCGATTGCAANTTGTGGCGTCTACTCGCTCTGGCGTCGNCTG
GCACCTGGATGTGCAGCGCCAGTTGGTGTCCATTTCGCTCACCTGTGCCG
CTCCCCAGATGCTCCAAAACCAGGGCTTTTCCAGCCTGGGCGAGCATCAC
TTCAAATGCGCCAAGCCGCAGTTCCTGGTGGCACCACAAGATGCCCAAGT
CGCTGCCGGGGAGCAGGTGGAGCTGAGCTGCGAGGTCACCGGCCTGCCCC
GCCCCCAGATCACGTGGATGCACAACACG
MXO03527.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:39:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12002-PA | 4584 | Pxn-RA | 1..560 | 9..568 | 2800 | 100 | Plus |
| CG12002-PC | 4584 | Pxn-RC | 1..560 | 9..568 | 2800 | 100 | Plus |
| CG12002-PD | 4584 | Pxn-RD | 1..560 | 9..568 | 2800 | 100 | Plus |
| CG12002-PE | 4584 | Pxn-RE | 1..560 | 9..568 | 2800 | 100 | Plus |
| CG12002-PB | 1374 | Pxn-RB | 1..560 | 9..568 | 2800 | 100 | Plus |
| CG12002-PA | 4584 | Pxn-RA | 588..819 | 598..829 | 1160 | 100 | Plus |
| CG12002-PC | 4584 | Pxn-RC | 588..819 | 598..829 | 1160 | 100 | Plus |
| CG12002-PD | 4584 | Pxn-RD | 588..819 | 598..829 | 1160 | 100 | Plus |
| CG12002-PE | 4584 | Pxn-RE | 588..819 | 598..829 | 1160 | 100 | Plus |
| CG12002-PB | 1374 | Pxn-RB | 588..819 | 598..829 | 1160 | 100 | Plus |
| CG12002-PA | 4584 | Pxn-RA | 561..587 | 570..596 | 135 | 100 | Plus |
| CG12002-PC | 4584 | Pxn-RC | 561..587 | 570..596 | 135 | 100 | Plus |
| CG12002-PD | 4584 | Pxn-RD | 561..587 | 570..596 | 135 | 100 | Plus |
| CG12002-PE | 4584 | Pxn-RE | 561..587 | 570..596 | 135 | 100 | Plus |
| CG12002-PB | 1374 | Pxn-RB | 561..587 | 570..596 | 135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:34:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pxn-RB | 2492 | CG12002-RB | 363..1186 | 4..829 | 4065 | 99.6 | Plus |
| Pxn-RE | 4820 | CG12002-RE | 57..880 | 4..829 | 4065 | 99.6 | Plus |
| Pxn-RD | 5196 | CG12002-RD | 433..1256 | 4..829 | 4065 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:34:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 2611316..2611557 | 710..467 | 1120 | 99.2 | Minus |
| 3L | 28110227 | 3L | 2611788..2612003 | 394..179 | 1080 | 100 | Minus |
| 3L | 28110227 | 3L | 2629141..2629315 | 178..4 | 860 | 99.4 | Minus |
| 3L | 28110227 | 3L | 2611041..2611160 | 829..710 | 600 | 100 | Minus |
| 3L | 28110227 | 3L | 2611638..2611710 | 467..395 | 365 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:34:42 has no hits.
MXO03527.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:39:29 Download gff for
MXO03527.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12002-PA | 1..819 | 9..829 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:07:50 Download gff for
MXO03527.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pxn-RD | 438..1264 | 1..829 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:03:11 Download gff for
MXO03527.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pxn-RD | 430..1256 | 1..829 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:03:11 Download gff for
MXO03527.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 2629141..2629316 | 1..178 | 98 | | Minus |
| 3L | 2611041..2611159 | 711..829 | 100 | <- | Minus |
| 3L | 2611316..2611557 | 467..710 | 99 | <- | Minus |
| 3L | 2611639..2611710 | 395..466 | 100 | <- | Minus |
| 3L | 2611788..2612003 | 179..394 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:07:50 Download gff for
MXO03527.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 2611041..2611159 | 711..829 | 100 | <- | Minus |
| arm_3L | 2611316..2611557 | 467..710 | 99 | <- | Minus |
| arm_3L | 2611639..2611710 | 395..466 | 100 | <- | Minus |
| arm_3L | 2611788..2612003 | 179..394 | 100 | <- | Minus |
| arm_3L | 2629141..2629316 | 1..178 | 98 | | Minus |
