MXO03528.5prime Sequence
836 bp (785 high quality bases) assembled on 2007-07-18
> MXO03528.5prime
CAGTCGACATGTCGGAAATGCAGATGGACTGTGCTTTGGATCTGATGCGG
AGGCTGCCGCCCCAGCAGATCGAGAAGAACCTTATTGATCTGATAGACTT
GGCACCGGATCTCTGCGAGGACTTGCTCTCCTCCGTGGACCAGCCGCTGA
AGATCGCCAAGGACAAGGAGCACGGCAAGGACTATCTGCTGTGCGACTAT
AACCGGGATGGGGACTCCTACAGATCGCCCTGGTCGAACTCCTACTATCC
GCCGCTGGAGGATGGCCAAATGCCCTCGGAACGACTGCGCAAACTGGAAA
TCGAGGCGAACTATGCCTTCGATCAGTACAGGGAGATGTACTACGAGGGA
GGCGTCTCCTCCGTCTACCTATGGGATCTGGATCACGGGTTTGCCGCCGT
TATACTGATCAAAAAGGCGGGAGATGGCAGCAAGATGATCCGCGGCTGCT
GGGACTCCATCCATGTGGTCGAGGTACAGGAGAAGACCACCGGCAGGACG
GCCCACTACAAGCTCACCTCCACGGCAATGCTCTGGCTGCAGACCAACAA
ACAGGGTTCGGGAACCATGAATCTNGGGCGGATCCCTCACCCGGCAGCAG
GAGCAGGACGCCAACGTCAGCGAGTCGTCGCCGCACATCGCCAACATTGG
CAAGATGGTCGAGGAGATGGAGAACAAGATCAGGAACACCCTGAACGAGA
TCTACTTTGGCAAGACCAAGGACATCGTGAACGGACTAAGGAGCACACAA
TCACTGGCCGATCAGCGCCAGCAGGCGGCCATGAAGCAGGACCTCGCAGC
GGCCATCCTGCGACGCAATGTCAAGCCCGAATCGAA
MXO03528.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:39:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17158-PA | 831 | cpb-RA | 1..566 | 9..574 | 2830 | 100 | Plus |
| CG17158-PA | 831 | cpb-RA | 567..827 | 576..836 | 1280 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:01:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cpb-RB | 1713 | CG17158-RB | 148..974 | 9..836 | 4100 | 99.8 | Plus |
| cpb-RA | 1591 | CG17158-RA | 211..1037 | 9..836 | 4100 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:01:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 1705399..1706223 | 11..836 | 4065 | 99.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:01:10 has no hits.
MXO03528.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:39:34 Download gff for
MXO03528.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17158-PA | 1..825 | 9..834 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:41:58 Download gff for
MXO03528.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cpb-RA | 211..1037 | 9..836 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:56:57 Download gff for
MXO03528.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cpb-RA | 211..1037 | 9..836 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:56:57 Download gff for
MXO03528.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 1705392..1706223 | 1..836 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:41:58 Download gff for
MXO03528.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 1705392..1706223 | 1..836 | 99 | | Plus |
