MXO03529.5prime Sequence
882 bp (787 high quality bases) assembled on 2007-07-18
> MXO03529.5prime
CAGTCGACATGAGCGCTACGAGTGTCCAGGAGGCGCCCAAGAAGGCGGTG
GCCACCAATGCCATCAAGTTCCTCTTCGGCGGCCTCTCCGGAATGGGAGC
CACCATGGTGGTGCAGCCGCTAGATTTGGTCAAGACCCGCATGCAGATTT
CTGGAGCGGGCAGTGGCAAGAAGGAGTACCGCAGCTCCTTGCACTGCATC
CAGACCATCGTGAGCAAGGAAGGACCTCTGGCCCTTTACCAGGGCATCGG
AGCTGCTCTGCTGAGACAGGCAACCTACACCACGGGAAGATTGGGCATGT
ACACGTATCTGAACGACCTGTTCAGGGAGAAGTTCCAGAGGAGTCCCGGC
ATCACGGACAGCATGGCCATGGGCACGATCGCCGGAGCATGTGGCGCCTT
TATTGGCACGCCCGCGGAAGTGGCCCTGGTGCGCATGACTTCCGACGGCA
GGTTGCCGGTGGCTGAGCGGAGGAACTACACTAATGTGGCCAACGCCCTG
GCTAGGATCACCAGGGAGGAGGGACTTACGGCTCTGTGGAGAGGCAGTCT
GCCCACGGTGGGTCGCGCCATNGGTCGTGAACATGACCCAACTGGCCAGC
TACTCGCAGTTTAAGACCTACTTCCGCCACGGACCCCTTCAGATGGAGGA
GGGCATCAAGCTGCACTTCTGCGCCAGCATGCTGAGCGGTCTACTGACCA
CCATCACTTCCATGCCGCTGGACATTGCCAAGACCCGTATCCAGAACATG
AAGATGGTCGATGGCAAGCCGGAGTACCGCGGCACCGCCGACGTCCTGCT
GCGCGTGGCCCGCCAGGAGGGAGTCTTTGCGCTGTGGAAGGGATTCACGC
CCTACTACTGCCGCCTGGGTCCCACACCGTGC
MXO03529.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:39:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1907-PA | 954 | CG1907-RA | 1..563 | 9..571 | 2615 | 98.5 | Plus |
| CG1907-PA | 954 | CG1907-RA | 564..864 | 573..873 | 1430 | 99 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:49:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1907-RA | 1623 | CG1907-RA | 467..1340 | 9..882 | 4160 | 98.5 | Plus |
| CG18418-RA | 1142 | CG18418-RA | 745..828 | 694..777 | 180 | 81 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:49:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29619721..29620465 | 128..873 | 3530 | 98.5 | Plus |
| 3R | 32079331 | 3R | 29619531..29619652 | 9..130 | 595 | 99.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:49:17 has no hits.
MXO03529.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:39:39 Download gff for
MXO03529.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1907-PA | 1..874 | 9..882 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:05:51 Download gff for
MXO03529.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1907-RA | 459..1340 | 1..882 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:41:18 Download gff for
MXO03529.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1907-RA | 459..1340 | 1..882 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:41:18 Download gff for
MXO03529.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29619523..29619650 | 1..128 | 96 | -> | Plus |
| 3R | 29619722..29620475 | 129..882 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:05:51 Download gff for
MXO03529.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25445245..25445372 | 1..128 | 96 | -> | Plus |
| arm_3R | 25445444..25446197 | 129..882 | 98 | | Plus |
