MXO03532.5prime Sequence
752 bp (559 high quality bases) assembled on 2007-07-18
> MXO03532.5prime
CAGTCGACATGTCCAACTCCCACTACAACAACTACCAGCAGCAGCAGCCG
CACTCCAGCAACGGAGATCCGGAATACCAGCACCAGCAGATGGTGCACCA
GCCGCAACGGTTCTCCAACGGCCATGGCATGAAGACCGTCGCTGTGCCAG
ACATGTGCCTGTTCTGCTTCGAGGTGCTTGACTGTGAGCTGAACAACGTC
GATGGTCCATCGGTGCCGGTGTTTAGCAACGACGCCTACCCACTCTTTGT
CACCTGGAAGATTGGGCGTGACAAGAGGCTGCGTGGCTGCATTGGTACTT
TTAGTGCAATGGAACTGCACCATGGTCTTCGGGAGTACGCCTTGACCAGC
GCCTTTAAGGACTCTAGATTTGCACCTATCTCTAGAGATGAGTTGCCACG
GCTAACTGTCTCGGTCTCGATCCTGCAGAACTTCGAGGAGGCTCAGGGCC
ACCTGGACTGGCAACTGGGCGTCCATGGCATCCGCATCGAGTTCCTCACA
AAACGCGGCTGCAAGCGCACAGCCACCTATTTGCCGCAGGTGGCCACCGA
ACAGGGCTGGGACAGCTGCAAACCATTGACTCACTCCTACGGAAGGGCGG
CTATCGGGCTGCCATAACTCCGGAGACGAGGAAGTCCATAAAGCTAACGC
GCTACCGTTCGCAGGAGATCCAGATGCACTACAAGGAGTACCGCGAGTAC
CAGGAGCGTCGCGCCCAGTTCGGCAAGGTGCAGTGCGCAAGCTTTCTAGA
CC
MXO03532.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:39:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5902-PB | 732 | CG5902-RB | 1..555 | 9..563 | 2725 | 99.6 | Plus |
| CG5902-PA | 732 | CG5902-RA | 1..555 | 9..563 | 2725 | 99.6 | Plus |
| CG5902-PB | 732 | CG5902-RB | 556..729 | 563..736 | 845 | 99.4 | Plus |
| CG5902-PA | 732 | CG5902-RA | 556..729 | 563..736 | 845 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:13:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5902-RC | 1953 | CG5902-RC | 642..1371 | 8..736 | 3580 | 99.5 | Plus |
| CG5902-RA | 1956 | CG5902-RA | 645..1374 | 8..736 | 3580 | 99.5 | Plus |
| CG5902-RB | 1725 | CG5902-RB | 414..1143 | 8..736 | 3580 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:13:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23987427..23988156 | 8..736 | 3555 | 99.5 | Plus |
Blast to na_te.dros performed 2014-11-28 20:13:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6743..6827 | 23..108 | 156 | 69 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6836..6925 | 26..113 | 155 | 69.2 | Plus |
MXO03532.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:39:49 Download gff for
MXO03532.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5902-PA | 1..732 | 9..740 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:26:12 Download gff for
MXO03532.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5902-RB | 406..1146 | 1..740 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:55:12 Download gff for
MXO03532.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5902-RB | 406..1146 | 1..740 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:55:12 Download gff for
MXO03532.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23987419..23988159 | 1..740 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:26:12 Download gff for
MXO03532.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19813141..19813881 | 1..740 | 98 | | Plus |
