MXO03533.5prime Sequence
866 bp (635 high quality bases) assembled on 2007-07-18
> MXO03533.5prime
CAGTCGACATGCCCATTGGATTCTCGGCCATCCTGTTGCCCCAGCTGATG
GATAACAACTCCACGGAGATACCCATTGATGTAGAGACGGGCTCCTGGAT
AGCAAGTGTCCATAGCCTGGCCACCCCATTCGGATCCCTGCTGTCGGGAC
CCCTGGCGGACTATTTGGGTCGCCGTAGGACCCTGATTCTCTCTGTGATT
CCCCTCCTCCTGGGATGGAGCACTCTGGCGATCGCCAAGAGCATCAAGGT
GGTGATCTTTGCACGCTTCCTGTGCGGATTCGCCACCGGAATTCTGGGTG
GACCCGGACAGGTGTACATTGCGGAAACGGCGGAACCTAATCTGCGGAGT
CTGCTGATCGGCGCGCCCTATGTGGCCTACTCAAGCGGCATCCTAATGGT
CTACTCCCTGGGCTCCATGATGTACTGGCGTAGTGTTGCGTGGTGCGCCA
ACGTGTTGCCCCTGCTGTCCATGGTGTCTATCTCGTTTATACCGGAGACT
CCGGCCTGGCTACTCCGCAATGGCCACGAGAAGCGTGCGCTGCAGGCCCT
CTCGTTCCTGCGGGGCAGCGAGATCAGTGCGCAGAAGGAGCTGAATGATA
TGAAGCAGAGGCTGGCCAAGGAGCGGGTGACCACCAAGACGAACGAGAAC
ATCTTCCAGCTGTGCTGCCAGCGCGTGGCCATCAAGCCGCTGGTCATTGT
GATCGTGTTCTCGCTGCTGCAGATGTTCTCCGGCACGTTCATCGTGATCT
TCTATGCCGTGGACATGATCTCGGAGTTCGGAGCGGAGTTCGACTCCAAG
CAGGCGGCCATTGCGACGGCAGTTGTCCGGGTGATCTGCTGCATGGTCTT
CTGCGTAGTCCTGATC
MXO03533.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:39:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4797-PB | 1602 | CG4797-RB | 219..1077 | 8..866 | 4120 | 99.1 | Plus |
| CG4797-PA | 1383 | CG4797-RA | 1..858 | 9..866 | 4115 | 99.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:01:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4797-RB | 2106 | CG4797-RB | 482..1340 | 8..866 | 4190 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:01:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23812951..23813507 | 866..310 | 2755 | 99.6 | Minus |
| 2R | 25286936 | 2R | 23814322..23814535 | 314..101 | 995 | 97.7 | Minus |
| 2R | 25286936 | 2R | 23814596..23814690 | 102..8 | 475 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:01:15 has no hits.
MXO03533.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:39:54 Download gff for
MXO03533.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4797-PB | 212..1077 | 1..866 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:53:19 Download gff for
MXO03533.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4797-RB | 475..1340 | 1..866 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:39:56 Download gff for
MXO03533.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4797-RB | 475..1340 | 1..866 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:39:56 Download gff for
MXO03533.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23812951..23813505 | 312..866 | 99 | <- | Minus |
| 2R | 23814325..23814533 | 103..311 | 97 | <- | Minus |
| 2R | 23814596..23814693 | 1..102 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:53:19 Download gff for
MXO03533.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19700474..19701028 | 312..866 | 99 | <- | Minus |
| arm_2R | 19701848..19702056 | 103..311 | 97 | <- | Minus |
| arm_2R | 19702119..19702216 | 1..102 | 96 | | Minus |
