MXO03534.5prime Sequence
870 bp (820 high quality bases) assembled on 2007-07-18
> MXO03534.5prime
CAGTCGACATGATAGGATTCTCGGCATCATTCCTCATGATGGCCGCCATC
TGCGAGTTGTCCAGCTACTATGTGGTCAATCCCTGGTGGTACATCATGGC
TGCAGTGCCCCACTCCCTGCTCGGTGGCAATTGCGTCTTCTCGGTGGCCG
CCTTCTGCTTCATCTCGGACATCACGGATTGCAAGTCGCGTCCGTACCGC
ATGATCTTCATGGAGTCGCTTTTCTTTATTGGACTGACAAGTGGATCTCT
GCTCTCTAGCTTTGTGTACGCGGCTGTGGGATCAGCGGCGACCATTGGGA
TTTCTGGCTGCATCGTTACTTTCGCAACGCTCTTTATCATCTTCTTTGTG
CCGGAGAGCTTGCACTTCCATAAGGAACAGGAAACGAAGAATGCGATAAC
TGCAAATGTCGAAAAGGAGTGCATCGACAGCAAAGTGCCTATAACCGCCT
GTGACCTCCAGTTGGACCGCGTTGCGATTGACTGCCCGCCGAACTTCATG
AACGATGAGGAGCCAGGGAAGGATAAGAGGATGGAGCTGCCCACACCGGC
AACGCCTGCGATGAGCTTCGACGACGACCTGTTGGCGAAGTACGTGGAGA
CGGCTGCCACAGAAGGCGGAGGAGCGCAAGCGCCAGGAGGCGGAAGAGCA
GGCCAAGAAGGCGGGTCTGTTCAGTATGGTACACATCAGGGACATGATCA
GCACCTGCTTCAAGCGTCGCGATCATCACGCGCGCGCCATCATCTGGCTG
GTTACGCTGGCCATGTTTCTGTCCATCTTTGTATTCGATGGAGTGATGAC
AGTGATGTACCTATTCGTGCGCGAGAAATTCCACTGGACTGTGCGGGACT
ACACATTCTTTGAAACGGTC
MXO03534.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:39:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8008-PA | 1320 | CG8008-RA | 1..591 | 9..599 | 2905 | 99.6 | Plus |
| CG8008-PA | 1320 | CG8008-RA | 592..861 | 601..870 | 1350 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:45:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8008-RB | 2680 | CG8008-RB | 655..1516 | 8..870 | 4260 | 99.7 | Plus |
| CG8008-RA | 2748 | CG8008-RA | 723..1584 | 8..870 | 4260 | 99.7 | Plus |
| CG15553-RC | 1784 | CG15553-RC | 511..668 | 58..215 | 265 | 78.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:44:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9159533..9160305 | 787..14 | 3790 | 99.6 | Minus |
| 2R | 25286936 | 2R | 9159390..9159473 | 870..787 | 420 | 100 | Minus |
| 3R | 32079331 | 3R | 31100366..31100486 | 178..58 | 245 | 80.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:45:00 has no hits.
MXO03534.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:39:59 Download gff for
MXO03534.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8008-PA | 1..861 | 9..870 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:40:59 Download gff for
MXO03534.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8008-RA | 721..1584 | 4..870 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:13:45 Download gff for
MXO03534.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8008-RA | 721..1584 | 4..870 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:13:45 Download gff for
MXO03534.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9159390..9159472 | 788..870 | 100 | <- | Minus |
| 2R | 9159533..9160305 | 14..787 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:40:59 Download gff for
MXO03534.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5046895..5046977 | 788..870 | 100 | <- | Minus |
| arm_2R | 5047038..5047810 | 14..787 | 99 | | Minus |
