MXO03538.5prime Sequence
863 bp (818 high quality bases) assembled on 2007-07-18
> MXO03538.5prime
CAGTCGACATGCTGCCCCTGCGATGCAGTTGGTCCTTTGCCCGGGCCAAC
TATAGCACCAAAAAGGAACTGGTGACTCGCTACAGCGGCGATTTCCCCGA
GAAACTGCTCAACCGGAAGCAAAAGGTTCCCACTCACATGTACATTGCAA
ATTCGGAGGCTGCTGCAAGGATTAACCAGTACCTGGAGCCCCATTTCCAG
AGCTCCGGTTGCGATACCGTGATGGAACTCAATTCCGGTGCTGGGTACTT
TACCCGGCATCTGTTGGACAGGGAATCCCAGTTTCGACGCATAATTCTGC
TTGAGAGCATGGATCACTTTATGCCCAAAATCCAGGAGCTACACACGCTA
TATCCGGAACGTGTGAAGGTGCGCCAAGGAGACTTTGTGAACCTGTGGAA
GTTGGTGTACATGGACAAAATGGACGGTGGTTCCAGGGTGGCGGATCTCC
TGAGTGATGTGCCCCAGAAAGCGTTTACAGATGATATCAACATGCTAGTC
TTCGGCGCCGTGGGCTCCTATCCATTCTTCAAGCACTTGATCAACTCCCT
CATTTTTCAGACCAGCCTTTTCAACCTTGGACGCTGTGAGATGATCCTCG
CCATGCCGCCACCCATATACATACATCTCACCTGCAACAACGAGATTGGC
TACCTCATTTACCGATCGACCAGCGTACTGTTTCAAATTCTGTTTGAGCA
CAAATTCATAGCCAAGGTGCCGCGCGAGGATTTTCTACCTCAGCAGATGG
CCTATAGCCCCACCAAGAGTAGCAAGTTGGGTAAGGTGCAGTCCATCAAT
CCCGAGTACTTGTACTTGGTGAAATTCACTCCGCGCCGCAATCTTCATGA
GCTGTGCCAGTCG
MXO03538.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:40:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3910-PA | 1359 | mtTFB2-RA | 1..855 | 9..863 | 4275 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:26:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mtTFB2-RA | 1512 | CG3910-RA | 96..950 | 9..863 | 4275 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:26:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10045669..10046143 | 9..483 | 2375 | 100 | Plus |
| 3R | 32079331 | 3R | 10046398..10046637 | 624..863 | 1200 | 100 | Plus |
| 3R | 32079331 | 3R | 10046196..10046336 | 483..623 | 705 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:26:44 has no hits.
MXO03538.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:40:12 Download gff for
MXO03538.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3910-PA | 1..855 | 9..863 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:49:44 Download gff for
MXO03538.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mtTFB2-RA | 93..950 | 6..863 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:08:45 Download gff for
MXO03538.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mtTFB2-RA | 93..950 | 6..863 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:08:45 Download gff for
MXO03538.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10045666..10046143 | 6..483 | 99 | -> | Plus |
| 3R | 10046197..10046336 | 484..623 | 100 | -> | Plus |
| 3R | 10046398..10046637 | 624..863 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:49:44 Download gff for
MXO03538.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5871388..5871865 | 6..483 | 99 | -> | Plus |
| arm_3R | 5871919..5872058 | 484..623 | 100 | -> | Plus |
| arm_3R | 5872120..5872359 | 624..863 | 100 | | Plus |
