MXO03540.5prime Sequence
858 bp (824 high quality bases) assembled on 2007-07-18
> MXO03540.5prime
CAGTCGACATGCCCGCCGCCGATGAACTGCAGTCGCCGTCCAGCGAAATG
GTCCTGCTGACCCCCAGCTCCGGCAATCCTCCCTCCAGCATTGCCCAACC
AGCGGCTAATCCTGCCGAGAAAGCTCAGTGTCGCGAGGGATCCGCCGAGT
CAGACAGCAGCAGGGTTGTGATCAAGAAGCAGCTGGGCCTCCTCGAAGGA
GTGGCCATCATCCTGGGCATCATCTTCGGATCCGGTATCTTTGTTTCTCC
GAAAGGCGTCATCCGGGAGGTGGAGTCCGTGGGCGCTTCGCTGGTCATCT
GGGTTCTCTGCGGACTGCTGTCCATGATTGGTGCTCTTTGCTACGCGGAA
CTTGGTACTGCCATACCAAAATCTGGGGGGGATTACGCGTATATCTTCGA
GGCCTACGGATCACTGCCGGCTTTCCTGTATCTCTGGGATGCCATGATGA
TATTCGTACCAACGACCAATGCCATTATGGGCCTGACCTTTGCCTCCTAC
GTGCTGGAACCCTTCTTCGGCGGAGCCTGTGAGATTCCCAAAATAGCGTT
ACAGCTCCTGGCAGCCATCACCATCTGCTTCCTAACCTACCTGAATTCGT
ACTACATGAAGGTGACCACCAAGATGCAAAACGTCATCATGTTCACCAAG
ATCGCCGCCCTGGTCTTGATCATCCTGGTAGGCCTGGTCTGGATGATGAT
GGGCAACGTGGAGAACTTCACGAGACCCTTTGATAACACTGAGACTGATC
CCGGCAAGATGTCGGTAGCCTTTTACTCCGGTATCTTTTCCTATGCCGGA
TGGAATTACTTGAACTTCATGACGGAGGAGCTCCGCGATCCATATCGCAA
CCTGCCGC
MXO03540.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:40:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6070-PA | 1554 | CG6070-RA | 1..850 | 9..858 | 4250 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:28:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gb-RB | 2190 | CG6070-RB | 106..956 | 8..858 | 4255 | 100 | Plus |
| gb-RA | 2635 | CG6070-RA | 551..1401 | 8..858 | 4255 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:28:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27111271..27111720 | 457..8 | 2250 | 100 | Minus |
| 3R | 32079331 | 3R | 27110247..27110647 | 858..458 | 2005 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:28:26 has no hits.
MXO03540.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:40:22 Download gff for
MXO03540.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6070-PA | 1..850 | 9..858 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:45:17 Download gff for
MXO03540.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gb-RA | 544..1401 | 1..858 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:09:27 Download gff for
MXO03540.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gb-RA | 544..1401 | 1..858 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:09:27 Download gff for
MXO03540.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27110247..27110647 | 458..858 | 100 | <- | Minus |
| 3R | 27111271..27111726 | 1..457 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:45:17 Download gff for
MXO03540.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22935969..22936369 | 458..858 | 100 | <- | Minus |
| arm_3R | 22936993..22937448 | 1..457 | 99 | | Minus |
