MXO03541.5prime Sequence
733 bp (189 high quality bases) assembled on 2007-07-18
> MXO03541.5prime
CAATCGACTTGAGCCTGCAGTCGATCAAGTACTCGCGGGGCAGCCTGGAA
ATCCTCGACCAGCTGCTCCTGCCCGGTCAGTCAAAGTACGTGGTGGTGCG
AGGAGTGGAGGATGGCTGGAAGGTCATCAACAAGATGCTGGTGCGTGGTG
CTCCGGCCATCGCTATCGTTGGCTGCCTCTCCCTGGCCGTGTTAAATCAA
CCCGGAGGATTTTGAGAACAAGAAATCACTGCGGCAAGAGATTGAGGGAA
AGTTGAACTATTTGGTTTCCGCCAGGCCTACGGCGGTCAACATGAAGATC
GCACCCGACTAGCTCATCACCCTGGCCAACGAACTTTACTAGGACTAGGC
AGTCGACGTGACCCAAATGAATCATACATTTCTGGACGCGACCGAGGCTA
TGCTAAAAAAAGACATTGCCGATAACCGTGCCATTGGAACGAATGGATCC
CATGCGATCCTACAGGGCGTGGCGAAGGCAGGTAAAGCGCCCGCTGGATC
GACGGGATCCGTCCGGGTGCTTACCCACTGCAACACGGGTTCCCTGGCCA
CCGCCGGGTACCGTACAGCTCTGGGAGTGGTCCGCCAACTGGCCGAGCTG
GGAAAACTGGATCACGTTTATTGCACAGATACTCGTCCTTACAATCAGGG
AGCCCGCCTCACAGCCTACGAACTGGTCCACGAGAAATTCCCCGCCTCTC
TGGTTCTGGATAGCATGGTGGCGGCTCTGCTGC
MXO03541.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:40:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11334-PA | 1095 | CG11334-RA | 185..724 | 194..733 | 2300 | 97 | Plus |
| CG11334-PB | 1095 | CG11334-RB | 185..724 | 194..733 | 2300 | 97 | Plus |
| CG11334-PA | 1095 | CG11334-RA | 2..183 | 10..191 | 860 | 98.9 | Plus |
| CG11334-PB | 1095 | CG11334-RB | 2..183 | 10..191 | 860 | 98.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:39:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11334-RC | 1380 | CG11334-RC | 97..819 | 10..733 | 3310 | 97.2 | Plus |
| CG11334-RB | 1452 | CG11334-RB | 169..891 | 10..733 | 3310 | 97.2 | Plus |
| CG11334-RA | 1516 | CG11334-RA | 233..955 | 10..733 | 3310 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:39:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31460630..31460862 | 610..378 | 1090 | 97.9 | Minus |
| 3R | 32079331 | 3R | 31460922..31461157 | 376..140 | 1015 | 96.2 | Minus |
| 3R | 32079331 | 3R | 31461811..31461944 | 143..10 | 640 | 98.5 | Minus |
| 3R | 32079331 | 3R | 31460441..31460561 | 733..613 | 575 | 98.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:39:43 has no hits.
MXO03541.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:40:29 Download gff for
MXO03541.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11334-PB | 2..724 | 10..733 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:45:44 Download gff for
MXO03541.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11334-RA | 229..955 | 6..733 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:25:40 Download gff for
MXO03541.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11334-RA | 229..955 | 6..733 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:25:40 Download gff for
MXO03541.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31460441..31460563 | 611..733 | 97 | <- | Minus |
| 3R | 31460630..31460862 | 378..610 | 97 | <- | Minus |
| 3R | 31460921..31461156 | 141..377 | 95 | <- | Minus |
| 3R | 31461814..31461946 | 6..140 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:45:44 Download gff for
MXO03541.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27286163..27286285 | 611..733 | 97 | <- | Minus |
| arm_3R | 27286352..27286584 | 378..610 | 97 | <- | Minus |
| arm_3R | 27286643..27286878 | 141..377 | 95 | <- | Minus |
| arm_3R | 27287536..27287668 | 6..140 | 97 | | Minus |
