MXO03542.5prime Sequence
875 bp (709 high quality bases) assembled on 2007-07-18
> MXO03542.5prime
CAGTCGACATGGGAAAGCTGCTGAGCCTGCTGTCACGCGACGACTCCAAT
TGTTGCGCCGCCAAATCCTACGATGTCTTCCTGGATTTCGAGAACGCCGC
GCCCACGGAAACGGAGCGTGCCGTCTACGACGAGGTGGAGCGGGTACTCC
GGGAATCGGAGGTGGTGCTCGACGAGATACAGATCTATCGGGGTGCCGGC
AAGGAAATCCGAGAAGCCATCGCCGATCCATCGCCGGAGGTGACCGCCAA
AGCCTGGGCGGCGGTGCTGCCGTTGGTGAACAAGCTGAAGCGCTGCTACG
AGCATTCCATGGAGCTGGACAAGATTGTGCCCAAGCTGCTGGGCCAGCTG
GTGGGCGGAAAACTGAATCCGACACAGCATCTGGAGACGCAGCAGGCGCT
GGTCAAGCAGCTGGCCGAGATCTTGGAGTTCGTGCTGAAGTTCGATGAGT
ACAAGATGAAAACCCCCGCCATACAGAATGATTTTAGCTACTACAGACGC
ATCGTCAGCCGACAGCGTGTGGATTCCACGGAGAATATGCTGGTCAGCAC
GGAACTGGCCAACCGGATGTCCCTGTTCTACGCCCACGCCACGCCCATGC
TCAAGGTGCTGAGCGAGGCGACCTCAAAGTTTGTCAATGACAATGCCGAT
GATGTCCAGAACACGACGGAAACGCTGGGCACCATGGCCAAGGTGTGCCT
GAGGATGCTGGAAAATCCAAAACTCCTGCAACAGATCGAGCGTGAGGACA
CGAAAATGCTGGTGCTGCGCGTAATGGTCGGCCTGGTGATCCTCTACGAC
CATGTGCATCCGGAGGGAGCCTTCGTGCGTGGCGCCCATGTGGATGTGAA
GGGGTGCGTCCGACTGCTGCAGGCG
MXO03542.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:40:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32066-PC | 975 | CG32066-RC | 1..867 | 9..875 | 4335 | 100 | Plus |
| CG32066-PB | 975 | CG32066-RB | 1..867 | 9..875 | 4335 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:18:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32066-RB | 2324 | CG32066-RB | 435..1301 | 9..875 | 4335 | 100 | Plus |
| CG32066-RC | 2112 | CG32066-RC | 353..1219 | 9..875 | 4335 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:18:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 10646859..10647127 | 459..191 | 1330 | 99.6 | Minus |
| 3L | 28110227 | 3L | 10641532..10641796 | 718..454 | 1325 | 100 | Minus |
| 3L | 28110227 | 3L | 10659364..10659547 | 192..9 | 920 | 100 | Minus |
| 3L | 28110227 | 3L | 10641309..10641465 | 875..719 | 785 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:18:37 has no hits.
MXO03542.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:40:36 Download gff for
MXO03542.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32066-PB | 1..867 | 9..875 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:35:25 Download gff for
MXO03542.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32066-RC | 348..1219 | 2..875 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:56:35 Download gff for
MXO03542.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32066-RC | 348..1219 | 2..875 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:56:35 Download gff for
MXO03542.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 10641309..10641465 | 719..875 | 100 | <- | Minus |
| 3L | 10641532..10641794 | 456..718 | 100 | <- | Minus |
| 3L | 10646863..10647126 | 192..455 | 100 | <- | Minus |
| 3L | 10659365..10659552 | 2..191 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:35:25 Download gff for
MXO03542.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 10634409..10634565 | 719..875 | 100 | <- | Minus |
| arm_3L | 10634632..10634894 | 456..718 | 100 | <- | Minus |
| arm_3L | 10639963..10640226 | 192..455 | 100 | <- | Minus |
| arm_3L | 10652465..10652652 | 2..191 | 97 | | Minus |
