MXO03543.5prime Sequence
794 bp (655 high quality bases) assembled on 2007-07-18
> MXO03543.5prime
CAGTCGACATGGATTTCGTTCAAGTGTCGGAGGAGGAGGGCGACGAGCCC
ATCGAGCTGCCGGCTGAGGAGGATGGCACTCTGCTTCTGTCCACACTGCA
AGCTCAGTTCCCTGGATCCTGCGGTCTGAAGTACCGCAACCTGGACACGA
AGGCTGTGCGCGGAGTTCGCTCCAACGAGGGCAGACTGTTTCCGCCCAGC
GTGGAGTCCGGCTGGGGCGAGTACGCTTACTTTTGCGTCTTTCCCAAGGA
GAACAAGCGCAAGAGCGACGATAACTTGGAGAACTCAACTGCCAAGACCA
AACGCATCGAGACCCGTCTGCGCTGCACTGATCTCATCGTGCTCGGCTTG
CCGTGGAAGACCACAGAGGAGAGCTTGCGTGAGTACTTCGAGACCTACGG
CGAGGTGCTGATGGCCCAGATCAAGAAGGACACCAAGTCGGGCCAGTCCA
AGGGCTTCGGTTTCGTGCGCTTCGGCTCTTACGATGCCCAGATGCGCGTG
CTCACCAATCGCCATCTGATCGACGGTCGCTGGTGCGAGGTTAAGGTGCC
CAACTCGAAGGGCATGGGCCACCAGGTGCCTTGCAAGGTGTTCGTGGGCC
GCTGCACCGAGGACATTAACTCGGACGACTTGCGCGAGTATTTCTCCAAG
TTTGGCGAAGTCACTGATGTGTTCATTCCCCGGCCCTTCAGGGCCTTTAG
CTTTGTAACCTTCCTTGATCCCGACGTGGCACAGTCCCTGTGCGGAGAGG
ATCACATTATCAAGGGCGTTTCGGTCCATGTGTCGAATGCTGCT
MXO03543.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:40:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10327-PB | 1596 | TBPH-RB | 1..786 | 9..794 | 3930 | 100 | Plus |
| CG10327-PC | 1596 | TBPH-RC | 1..786 | 9..794 | 3930 | 100 | Plus |
| CG10327-PA | 999 | TBPH-RA | 1..786 | 9..794 | 3930 | 100 | Plus |
| CG10327-PD | 1596 | TBPH-RD | 1..786 | 9..794 | 3930 | 100 | Plus |
| CG7804-PA | 957 | CG7804-RA | 200..342 | 208..350 | 365 | 90.2 | Plus |
| CG7804-PA | 957 | CG7804-RA | 6..92 | 14..100 | 310 | 94.2 | Plus |
| CG7804-PA | 957 | CG7804-RA | 410..487 | 418..495 | 265 | 93.5 | Plus |
| CG7804-PA | 957 | CG7804-RA | 517..608 | 525..616 | 235 | 90.2 | Plus |
| CG7804-PA | 957 | CG7804-RA | 113..193 | 121..201 | 230 | 91.3 | Plus |
| CG7804-PA | 957 | CG7804-RA | 731..784 | 739..792 | 145 | 90.7 | Plus |
| CG7804-PA | 957 | CG7804-RA | 367..395 | 375..403 | 145 | 100 | Plus |
| CG7804-PA | 957 | CG7804-RA | 661..704 | 669..712 | 145 | 93.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:39:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TBPH-RF | 1930 | CG10327-RF | 119..904 | 9..794 | 3930 | 100 | Plus |
| TBPH-RE | 2159 | CG10327-RE | 348..1133 | 9..794 | 3930 | 100 | Plus |
| TBPH-RD | 2156 | CG10327-RD | 345..1130 | 9..794 | 3930 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:39:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15472795..15473578 | 792..9 | 2300 | 86.2 | Minus |
| 2R | 25286936 | 2R | 23860832..23861144 | 561..249 | 1565 | 100 | Minus |
| 2R | 25286936 | 2R | 23861206..23861446 | 249..9 | 1205 | 100 | Minus |
| 2R | 25286936 | 2R | 23860570..23860777 | 766..559 | 1040 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:39:56 has no hits.
MXO03543.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:40:42 Download gff for
MXO03543.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10327-PC | 1..786 | 9..794 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:45:53 Download gff for
MXO03543.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TBPH-RD | 338..1130 | 1..794 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:25:45 Download gff for
MXO03543.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TBPH-RD | 338..1130 | 1..794 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed on 2014-11-28 20:25:45 has no hits.
Sim4 to na_arms.dmel.RELEASE5 performed on 2013-08-04 22:45:53 has no hits.
