MXO03544.5prime Sequence
838 bp (697 high quality bases) assembled on 2007-07-18
> MXO03544.5prime
CAGTCGACATGGGTTGCATGCGCTACTTGTCGGAGGCTCATTTGAGGGGC
TTCGAGCGTTACAAGTACAGCAGTATAGACACGAGCTTCCTCAGCGTCTA
TGTGATGCACCCTTTTTGGAACTACTGTGTGAAGTTTGTTCCCAAATGGC
TGGCGCCCAACGTTTTGACCTTCGTGGGCTTTCTCATGACTGTCGTCAAC
TTTATCCTGATAGCTTACTATGATTGGGGTTTCGAAGCAGCCAATTCAGA
GACAGGAAATACGGTGCCCGCCTGGGTTTGGACAGTGGCGGCCATAAATA
TACTCATTTACTACAACTTGGATGGCATGGATGGCAAGCAGGCTCGAAGA
ACTGGAACGAGTGGACCTCTGGGAGAGCTATTCGATCATGGATTGGACTC
CTATTCAGCTGCCCTGATACCCATTTACCTATTCTCCTTATTCGGCACAC
ACGACTTGCCACCGATTCGTATGTTCTTTGTGATCTGGAACGTATTTCTC
AACTTCTATTTAACGCACGTGGAAAAGTACAATACGGGTGTTATGTTCTT
GCCCTGGGGTTACGACTTTACCATGTGGGGAGTTAGTGGCATGCTGTTTG
TGGCAACCGTCTTTGGTCCTGAGATGTATCGCTTTAGCATATATGGTTTC
ACCATGGCGAATATGTTTGAGTTCGTTCTAATTGGTTCCGGCATGGTCAG
CAGTCATCCGATTATTGCTAGAAATATCTATCTTTCCTATAAAAACAAGA
CTGGAAAAATGCGACCCATGTGGGATATGCTGCAACCATTTTTCGCCTTC
GTTTGGCTTTTTGAGATCACTGTAGTCTGGTCGTTTTT
MXO03544.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:40:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7149-PA | 1248 | CG7149-RA | 1..830 | 9..838 | 4075 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:48:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7149-RC | 2191 | CG7149-RC | 480..1309 | 9..838 | 4105 | 99.6 | Plus |
| CG7149-RB | 1902 | CG7149-RB | 480..1309 | 9..838 | 4105 | 99.6 | Plus |
| CG7149-RA | 2467 | CG7149-RA | 480..1309 | 9..838 | 4105 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:48:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7787833..7788091 | 579..321 | 1295 | 100 | Minus |
| 2L | 23513712 | 2L | 7788151..7788339 | 321..133 | 945 | 100 | Minus |
| 2L | 23513712 | 2L | 7787613..7787768 | 733..578 | 780 | 100 | Minus |
| 2L | 23513712 | 2L | 7787448..7787552 | 838..734 | 480 | 97.1 | Minus |
| 2L | 23513712 | 2L | 7788399..7788469 | 134..64 | 355 | 100 | Minus |
| 2L | 23513712 | 2L | 7790022..7790078 | 65..9 | 285 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:48:46 has no hits.
MXO03544.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:40:47 Download gff for
MXO03544.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7149-PA | 1..830 | 9..838 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:22:08 Download gff for
MXO03544.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7149-RA | 480..1309 | 9..838 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:37:44 Download gff for
MXO03544.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7149-RA | 480..1309 | 9..838 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:37:44 Download gff for
MXO03544.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7787834..7788090 | 322..578 | 100 | <- | Minus |
| 2L | 7788151..7788337 | 135..321 | 100 | <- | Minus |
| 2L | 7788399..7788467 | 66..134 | 100 | <- | Minus |
| 2L | 7790022..7790078 | 9..65 | 100 | | Minus |
| 2L | 7787448..7787552 | 734..838 | 97 | <- | Minus |
| 2L | 7787613..7787767 | 579..733 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:22:08 Download gff for
MXO03544.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7787448..7787552 | 734..838 | 97 | <- | Minus |
| arm_2L | 7787613..7787767 | 579..733 | 100 | <- | Minus |
| arm_2L | 7787834..7788090 | 322..578 | 100 | <- | Minus |
| arm_2L | 7788151..7788337 | 135..321 | 100 | <- | Minus |
| arm_2L | 7788399..7788467 | 66..134 | 100 | <- | Minus |
| arm_2L | 7790022..7790078 | 9..65 | 100 | | Minus |
