MXO03545.5prime Sequence
885 bp (762 high quality bases) assembled on 2007-07-18
> MXO03545.5prime
CAGTCGACATGAGCTTGTTGGTGCAAGTGTTCAAGTGGGACCAGCGATGT
CCCATGCTCCACAGGGTGGACATCCTGCTGCGGCGTGGCGTCAAGAAGCA
GGCGGTGTATCCGACCAAACTGGCTGAGGTGGGTCGCCTGGTGGATGCCC
GCGACGACCGGTACGAGACGGGCCAACTATTCCTGCACCGCATCTTCGGC
TACCGCGGCGTTATACTCTTCCCCTGGACAGCCCGCGTCTACGACCGGGA
TCTGCACAATCCTGGCAAGATTAGCGCCACCACGACTACGAGCGCCAATC
CGACGCAGCAGAACCGCACCAAAGAGGCTTCGCTCCGCGTGAAGGCCAAC
ACCTCCGCTTCCCCAACGGCTGCTACCGCTCAGAGCGCCGATGCCCCCAC
CTCGACCGCCTTTGAGACGAACGCGGCTGAAAGTACAGGCACCACAAACC
TGGGTACCACCTCCCAAGTGGATCCCAAAGAGGTCAAGGGCAAGGTGCAA
ACCTTTTATCAGGTGCTCATAGACACCCGCGATTGCCCGTACATTCGCGC
CCAGACCGAGGCGGTCACCTTTCTCGGCAACCAGGACTCCAACCGCAGCC
TCTACGCCATCCCCGGGCTGGACTACGTGGCCCACGAGGACATCATGCCT
TACAGCTCCAGCGAGAAGAGTCCGCTGCAGCACGAGCTGTTCGATAAGTT
CCTTACGCACGCTCCGGACGCGGACCCGCCATTTGTGGGCCAGGACACTC
TGAAGGCGTGGCAGGAGAAGAACCATCCCTGGCTGGACATGAGCGATGTA
CACAAGGAGACCACGGAGAACGTGCGCATTACCGTGATTCCCTTCTACAT
GGGTTGCCGGGAGACGCCTGCTATTTCGGTCTACT
MXO03545.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:40:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12162-PA | 1233 | CG12162-RA | 1..877 | 9..885 | 4360 | 99.8 | Plus |
| CG12162-PB | 1296 | CG12162-RB | 174..940 | 119..885 | 3810 | 99.8 | Plus |
| CG12162-PB | 1296 | CG12162-RB | 11..120 | 9..118 | 550 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:13:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12162-RA | 1595 | CG12162-RA | 263..1139 | 9..885 | 4370 | 99.9 | Plus |
| CG12162-RB | 1639 | CG12162-RB | 390..1156 | 119..885 | 3820 | 99.9 | Plus |
| CG12162-RB | 1639 | CG12162-RB | 227..336 | 9..118 | 550 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:13:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5468203..5468629 | 119..545 | 2135 | 100 | Plus |
| 3R | 32079331 | 3R | 5468689..5469028 | 546..885 | 1685 | 99.7 | Plus |
| 3R | 32079331 | 3R | 5468040..5468149 | 9..118 | 550 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:13:14 has no hits.
MXO03545.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:41:00 Download gff for
MXO03545.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12162-PA | 1..877 | 9..885 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:26:15 Download gff for
MXO03545.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12162-RA | 256..1139 | 1..885 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:55:16 Download gff for
MXO03545.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12162-RA | 256..1139 | 1..885 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:55:16 Download gff for
MXO03545.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5468033..5468149 | 1..118 | 96 | -> | Plus |
| 3R | 5468203..5468629 | 119..545 | 100 | -> | Plus |
| 3R | 5468689..5469028 | 546..885 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:26:15 Download gff for
MXO03545.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1293755..1293871 | 1..118 | 96 | -> | Plus |
| arm_3R | 1293925..1294351 | 119..545 | 100 | -> | Plus |
| arm_3R | 1294411..1294750 | 546..885 | 99 | | Plus |
