MXO03546.5prime Sequence
826 bp (757 high quality bases) assembled on 2007-07-18
> MXO03546.5prime
CAGTCGACATGACGAGCTTGGATTTCAGACTGGCAGTAGCTCTCTGGCTA
ATCTGTACGTCGGCTGCCCAGAACTCCACGGATGTCGAACAGGATGGCCG
CATTGTCGGCGGCTGGGAGACGCACATCACCTTCTTTCCGCACCAAGTAT
CCCTGCAGTTGGGCACCCGGCATGCATGCGGTGGAACCATCATTTCGCCC
AACATCATCTTGACTGCTGCTCACTGTGTGCTGGAGTACAGTAAACCGCA
ATATTACGTGATTCGAGCCGGATCTAGCGATTGGACGAAGGGCGGCAGCT
ATATTCGCGTCAAAAAGATCATTCCGCATCCTGAGTTCCATGACCCCACG
AGGATGAACAATGACATTGCCATTGTTCAGCTGCAGCAACCCCTTGTCTA
TAGTCAGGATATACGACCCATAAGCTTGGCCACCAGTAAGGACATCATTA
TGCCGACCGCACAGCTTTTTGTAAGCGGCTGGGGCAGCACGTCGATCTCA
CAAATGCAGCCGGAAAAGCGTCTTCGCTACACCGTTGTCCATCTGAGAGA
TCAGAACCAGTGTGCCAGAAACTATTTCTGGAGCTGGCACCGTGACCAAC
ACCATGTTCTGCGCGGGAACTCAGGCGGGAGGAAGAGATAGCTGCCAGGG
AGATTCGGGCGGTCCACTTGTCACATCTATAGATGGCCGTCTAAAGCTCT
ACGGCATTGTGTCCTGGGGATTTGGATGCGCAAACGCCATGTTTCCTGGA
ATTTACACAAAAGTTTCGGCCTATGACGACTGGATAGCGCAGACAATTGA
GGAGCTGGGTCGCAGCTTTCTAGACC
MXO03546.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:41:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13430-PA | 804 | CG13430-RA | 1..570 | 9..578 | 2850 | 100 | Plus |
| CG13430-PB | 804 | CG13430-RB | 1..570 | 9..578 | 2850 | 100 | Plus |
| CG13430-PA | 804 | CG13430-RA | 571..799 | 580..808 | 1145 | 100 | Plus |
| CG13430-PB | 804 | CG13430-RB | 571..799 | 580..808 | 1145 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:01:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18065-RA | 1631 | CG18065-RA | 658..1456 | 9..808 | 3975 | 99.9 | Plus |
| CG13430-RB | 1009 | CG13430-RB | 36..834 | 9..808 | 3975 | 99.9 | Plus |
| CG13430-RA | 1631 | CG13430-RA | 658..1456 | 9..808 | 3975 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:01:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20550509..20551307 | 808..9 | 3950 | 99.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:01:27 has no hits.
MXO03546.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:41:05 Download gff for
MXO03546.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13430-PB | 1..804 | 9..815 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:53:26 Download gff for
MXO03546.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18065-RA | 651..1462 | 2..816 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:40:01 Download gff for
MXO03546.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13430-RA | 651..1462 | 2..816 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:40:01 Download gff for
MXO03546.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20550503..20551312 | 2..816 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:53:26 Download gff for
MXO03546.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16438008..16438817 | 2..816 | 99 | | Minus |
