MXO03550.5prime Sequence
872 bp (750 high quality bases) assembled on 2007-07-18
> MXO03550.5prime
CAGTCGACATGTCTATTGGGTTTAGGTATAGAGCCAACAATTATGCACGT
CTGATAACCAAATACTTTTGCATCCACATCAAGATCGACATGGAGGCGCC
GGAGTTCAAGGATTTTGCCAAGACAATGGTCGACTTTATAGCCGAATATC
TGGAGAATATACGCGAAAGGCGCGTTCTGCCGGAAGTGAAGCCTGGCTAC
CTGAAGCCATTGATTCCGGATGCTGCGCCCGAGAAGCCGGAGAAGTGGCA
GGATGTGATGCAGGACATCGAGCGAGTCATCATGCCGGGCGTGACACACT
GGCACAGTCCCAAGTTTCATGCCTACTTCCCCACGGCCAACTCGTATCCA
GCGATCGTTGCGGACATGCTGAGTGGAGCGATTGCCTGCATCGGATTCAC
GTGGATCGCCAGTCCCGCGTGCACGGAACTCGAGGTGGTCATGATGGATT
GGCTGGGCAAGATGCTGGAGCTGCCGGCAGAGTTCCTGGCCTGTTCGGGC
GGCAAGGGTGGCGGTGTCATCCAGGGCACGGCCAGTGAGTCCACACTGGT
GGCTCTGCTGGGAGCCAAGGCCAAGAAGTTGAAGGAGGTGAAGGAGCTCC
ATCCGGAGTGGGATGAGCACACCATCTTGGGCAAGTTGGTGGGCTACTGC
TCGGACCAGGCTCACTCATCCGTGGAGCGGGCTGGTCTTCTGGGCGGAGT
AAAGCTCCGTTCCGTGCAGTCCGAGAATCACAGAATGCGTGGTGCTGCCC
TGGAAAAGGCCATCGAACAGGATGTGGCCGAGGGTTTGATTCCCTTCTAC
GCGGTGGTCACCCTGGGCACCACCAACTCCTGCGCCTTCGACTACTTGGA
TGAGTGTGGACCGGTGGGAAAC
MXO03550.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:41:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10697-PA | 1509 | Ddc-RA | 1..864 | 9..872 | 4320 | 100 | Plus |
| CG10697-PC | 1533 | Ddc-RC | 99..888 | 83..872 | 3950 | 100 | Plus |
| CG10697-PB | 1428 | Ddc-RB | 1..783 | 90..872 | 3915 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:57:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ddc-RD | 2797 | CG10697-RD | 991..1854 | 9..872 | 4320 | 100 | Plus |
| Ddc-RC | 2085 | CG10697-RC | 353..1142 | 83..872 | 3950 | 100 | Plus |
| Ddc-RB | 1929 | CG10697-RB | 197..986 | 83..872 | 3950 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:57:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19117426..19118130 | 872..168 | 3525 | 100 | Minus |
| 2L | 23513712 | 2L | 19119155..19119316 | 170..9 | 810 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:57:18 has no hits.
MXO03550.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:41:27 Download gff for
MXO03550.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10697-PA | 1..864 | 9..872 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:47:01 Download gff for
MXO03550.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ddc-RD | 986..1854 | 4..872 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:32:06 Download gff for
MXO03550.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ddc-RD | 986..1854 | 4..872 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:32:06 Download gff for
MXO03550.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19117426..19118128 | 170..872 | 100 | <- | Minus |
| 2L | 19119156..19119321 | 4..169 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:47:01 Download gff for
MXO03550.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19117426..19118128 | 170..872 | 100 | <- | Minus |
| arm_2L | 19119156..19119321 | 4..169 | 98 | | Minus |
