MXO03551.5prime Sequence
877 bp (759 high quality bases) assembled on 2007-07-18
> MXO03551.5prime
CAGTCGACATGACGAGCACGCTACAAGAAGGAATCCTGGTCGGATGCGGC
AACCCGCTGCTGGACATCTCCGCCGTTGTTCCACTGAACTTCCTGCAGAA
GTACTCTATGAACGAGGATGATGCGATCCTTGCCGAGGACCGACACATGC
CCATCTACGGGGAGCTGGTCGAAGGCTACCAGGCTGAGTTTCTGGCTGGC
GGATCCGTGCAAAATTCTCTGAGAATTGCCCAATGGATTCTTCGACAGCC
CAGGGTGGCTGTGTTCTTCGGCTGCGTCGGCGAGGATCGGTACGCCAATA
TCTTGAAGGAAAAGGCGCAAGCCGCCGGACTGGATGTTCACTACCAGGTG
AAGAAGGACGTGCCCACGGGAACCTGTGCCGTTCTGATCACCGGCACCCA
CCGATCGCTCTGCGCTAATCTGGCGGCCGCCAATAACTTCACCATCGATC
ACCTGGAGGAGCCCAGCAACAAGGCTCTGGTGGATAACGCCCAGTACTAC
TACATTTCGGGCTTCTTCCTCACTGTGAACCCGCCAAGCATTATGCAGGT
GGCGGCCACCGCCCACGCCAAACNAGCGACCGTTCCTAATGAACCTCAGC
GCACCATTCATATCGCAATTCTACATGGCACCGCTGCTGGCCGCCCTGCC
TTACGTGGACATCATCTTTGGCAACGAGGCGGAGGCTCAGGCGTTCGCCG
AGGCCCAGCAGTGGCCTAGCGGGGACCTGCGCGAGATTGGCAAGCGACTG
GTGGCGATGGAGAAGAAAAACCCGACGCGGCCGCGCATTGCCATTCTCAC
GCAGGGCTGCGATCCTGTACTGCTTATACAGCAGGATTCGGTGCAGGAAT
TCCCGGTCACGAAATTGGCGGTGCATG
MXO03551.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:41:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11255-PA | 1038 | CG11255-RA | 1..565 | 9..573 | 2825 | 100 | Plus |
| CG11255-PB | 1038 | CG11255-RB | 18..565 | 26..573 | 2740 | 100 | Plus |
| CG11255-PA | 1038 | CG11255-RA | 566..868 | 575..877 | 1515 | 100 | Plus |
| CG11255-PB | 1038 | CG11255-RB | 566..868 | 575..877 | 1515 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:32:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| AdenoK-RC | 1847 | CG11255-RC | 235..1102 | 9..877 | 4320 | 99.9 | Plus |
| AdenoK-RA | 1580 | CG11255-RA | 235..1102 | 9..877 | 4320 | 99.9 | Plus |
| AdenoK-RB | 1387 | CG11255-RB | 59..909 | 26..877 | 4235 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:32:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 13021073..13021557 | 510..26 | 2425 | 100 | Minus |
| 3L | 28110227 | 3L | 13020460..13020827 | 877..509 | 1795 | 99.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:32:32 has no hits.
MXO03551.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:41:34 Download gff for
MXO03551.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11255-PA | 1..868 | 9..877 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:52:07 Download gff for
MXO03551.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11255-RA | 227..1102 | 1..877 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:10:03 Download gff for
MXO03551.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| AdenoK-RA | 227..1102 | 1..877 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:10:03 Download gff for
MXO03551.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 13020460..13020826 | 510..877 | 99 | <- | Minus |
| 3L | 13021074..13021557 | 26..509 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:52:07 Download gff for
MXO03551.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 13013560..13013926 | 510..877 | 99 | <- | Minus |
| arm_3L | 13014174..13014657 | 26..509 | 100 | <- | Minus |
