MXO03552.5prime Sequence
863 bp (754 high quality bases) assembled on 2007-07-18
> MXO03552.5prime
CAGTCGACATGTCCCAGAGTTTTGTGCCAGTGCCAGAGAACAGCGATTTT
CCGCTGGAAAATCTACCCTACGCTGTCTTCTCAACCGAAAACAATAAAGT
TCACCGTATTTGTGTGGCCATTGGAGAGCATGTCCTGGACCTGAAAGCTG
TCTCGCAGTTGTTTCCTTTCCAAGTTCAGAAAAGCCTGCAGGCCGAAACT
TTGAATGAGCTTATGGGATTGGACTTTGAAGCTTGGGATGTGGTAAGAAG
CCAGACTCAAAAGCTATTGACGAAGGGTTCAGAATTGGACCACAATGTGG
ACTTGAAGGCGGTTTCCATTGTGCCACAGTCTGAGATCAAGCTGCACCTG
CCTGCACAGATTGGTGACTATACAGACTTTTACTCATCCATCCACCATGC
CACCAATGTCGGCATTATGTTCCGTGGACCAGACAATGCTCTGATGCCCA
ACTGGCGCCATCTGCCGGTGGGCTATCATGGTCGTGCAAGTTCTGTGGTG
GTTTCCGGTACTCCCATCCGTCGTCCTCTTGGTCAAACGTTTCCCGATGG
AGCAGAGAAGCCCGTCTTTGGCGCCTGCAAGCTTCTGGATTTCGAACTAG
AAATGGCTTTCTTTATCGGTGGTAAGGGAAATCAGCTGGGTGAACCCATA
CGCGTGGATGAGGCCTGGAAGAACGTGTTCGGTTTCACGCTGATGAACGA
CTGGAGTGCCAGGGATATTCAGAAGTGGGAATATGTGCCACTGGGCCCCT
TCACCGCAAAGAATCTGGGAACCACCATCTCCCCTTGGGTAGTGCCCACA
GCTGCCCTGAAGCCCTTCGTCTTGAACAACTTTCCTCAGGAAACGGAGGT
GCTTCCCTATCTG
MXO03552.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:41:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14993-PA | 1254 | Faa-RA | 1..855 | 9..863 | 4225 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:18:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Faa-RA | 1421 | CG14993-RA | 115..969 | 9..863 | 4245 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:18:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4072542..4073091 | 863..314 | 2720 | 99.6 | Minus |
| 3L | 28110227 | 3L | 4073152..4073369 | 313..96 | 1090 | 100 | Minus |
| 3L | 28110227 | 3L | 4073754..4073840 | 95..9 | 435 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:18:39 has no hits.
MXO03552.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:41:39 Download gff for
MXO03552.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14993-PA | 1..855 | 9..863 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:35:28 Download gff for
MXO03552.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Faa-RA | 115..969 | 9..863 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:56:37 Download gff for
MXO03552.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Faa-RA | 115..969 | 9..863 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:56:37 Download gff for
MXO03552.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4072542..4073091 | 314..863 | 99 | <- | Minus |
| 3L | 4073152..4073369 | 96..313 | 100 | <- | Minus |
| 3L | 4073754..4073840 | 9..95 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:35:28 Download gff for
MXO03552.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4072542..4073091 | 314..863 | 99 | <- | Minus |
| arm_3L | 4073152..4073369 | 96..313 | 100 | <- | Minus |
| arm_3L | 4073754..4073840 | 9..95 | 100 | | Minus |
