MXO03554.5prime Sequence
872 bp (578 high quality bases) assembled on 2007-07-18
> MXO03554.5prime
CAGTCGACATGCTGGCCGCCCCGGAGAACCGCTTCCAGCATGTGTACTTC
GCGCTATCCGCCCTGGTGGCTAGCGCCATGCTCGTCCTGGTCTACATATC
CATGCGCTCGAGCCTTAACGAGCGGCTGCGCGAGGATCTGGCCAAGGCGC
AGCGACAGATGATCTTCGAGAGGCCGAATCCACACTGGGACTACAGCAAC
AGTTGGCGCCGGATAGGGAACAGCACGCTCAGGCATGAGATATACTCGGC
GTATTTCGATGCCAGGACGGATATCGTAGGTAATGTCCGCATGGATGACG
AGCAGATGACAATTGGTTCGCTGCGCATTTTCGCCATTCTGCCGGAGCGT
CTGCGCGACTCGTCGATAAACTGCATCGTGCGCTTCTCGGACTTCTCCAG
CCAGGAGATCAAGGCCGAGGAGGCGGGCGCCATGCACGATGTGCACAACA
ACACCTTTGCGGCGTGGAGCATCATGTGTCCGCTGCACGCCTCCCGCCGC
TCTCCCTTGCGCCTTCCCCAGGCAGTGGCCTTGGCCTACGCGTCCAATCG
ACTCAGTCACCTTAGTCCTACCTTTATTCAGATCAGTTATCCCCGCAACA
TGACCAACATGTTTGGCCGATCTCGACCCACGATCTCCGTGTGTGTGGGT
CCCCTCCACGAGAACTACTCGAATGTGCTGCGGCTGGTGGAGTTCGTGGA
GATGTACCGCCTGCAGGGTGCAACCCACTTCTACTTCTACTACGTAGAGG
CCAGCGAGGAGGTGCTTCGCGTGCTGGAGCACTACCAACGGATTGGCCTG
GCCGATGTCTTCGAATGGAATGTCCCAGCGCATATGCAGGATGTCCACTA
CGCCGGAATCGTGGCCCAGTTC
MXO03554.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:41:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12910-PA | 1401 | CG12910-RA | 1..864 | 9..872 | 4270 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:06:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12910-RC | 2487 | CG12910-RC | 847..1713 | 6..872 | 4305 | 99.8 | Plus |
| CG12910-RA | 1702 | CG12910-RA | 62..928 | 6..872 | 4305 | 99.8 | Plus |
| CG12910-RB | 1705 | CG12910-RB | 176..931 | 117..872 | 3750 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:06:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10267734..10268042 | 278..586 | 1545 | 100 | Plus |
| 2R | 25286936 | 2R | 10268143..10268431 | 584..872 | 1415 | 99.3 | Plus |
| 2R | 25286936 | 2R | 10267100..10267264 | 117..281 | 825 | 100 | Plus |
| 2R | 25286936 | 2R | 10266917..10267027 | 6..116 | 555 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 20:06:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rt1a | 5108 | Rt1a DME278684 5108bp Derived from AJ278684 (AJ278684.1) (Rel. 64, Last updated, Version 1). | 582..665 | 755..667 | 109 | 61.8 | Minus |
MXO03554.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:41:51 Download gff for
MXO03554.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12910-PA | 1..864 | 9..872 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:52:31 Download gff for
MXO03554.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12910-RA | 59..928 | 1..872 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:36:26 Download gff for
MXO03554.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12910-RA | 59..928 | 1..872 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:36:26 Download gff for
MXO03554.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10266914..10267027 | 1..116 | 97 | -> | Plus |
| 2R | 10267100..10267262 | 117..279 | 100 | -> | Plus |
| 2R | 10267736..10268042 | 280..586 | 100 | -> | Plus |
| 2R | 10268146..10268431 | 587..872 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:52:31 Download gff for
MXO03554.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6154419..6154532 | 1..116 | 97 | -> | Plus |
| arm_2R | 6154605..6154767 | 117..279 | 100 | -> | Plus |
| arm_2R | 6155241..6155547 | 280..586 | 100 | -> | Plus |
| arm_2R | 6155651..6155936 | 587..872 | 99 | | Plus |
