MXO03556.5prime Sequence
869 bp (794 high quality bases) assembled on 2007-07-18
> MXO03556.5prime
CAGTCGACATGCGCCAACTGCAGTTGCTTGGTTTTCTGATCGCCATACTG
CAAATCAGCTATATAAGTGCCCAAAACTTGCCATATATCCAGTGTCCGAT
GATATTTCGGTACCTGGAGTACGACAATCAGTTCATTGGACACTTGCAGC
TAACCCTGGATAGTACAAATACGGAGAACGTTGTGCGCGTTGAACTTTCC
CAGCGTGGCAGAAACACCCCGTCGACTCCGGGCACTCTTAACTTCTTGGA
GGATGAGGATTCGCTGAGGCATCGCTTGACTAACAATGAGCCCATCAACT
ACAGAATTGACTTTCCAACGCCGGGCGTGGTGCCCAAACTCACAAAGGTT
ACGGTTAATGGAAAAGTTGCGTGCGAGGCTGTGCCTTTTGGAGCTCCTAG
CACAAGGCTATCTTTGTCGCGAACTCTGCGAACTTCTGTGCCTTTGGCAG
CTATACCGCCGTCTCAGCGGACTGATCACCAATGGCCCCAGGCCCCTCAG
ACCAACTACACTGTATATGAGGAGGAGGAGGAAGAGGAGCCAGTTCAAAG
ACGCCGCCCACAACAGCGTCCTTCGAGGCCGCGTCCACAACAGGCGCCGT
CAAGACCACGGCTGCAACCCGTGCCTCAATTGCCACAAGAACCAGAGTTC
CAGACGTCAGCCAGACCTTCAGTTCATCCGTCGAATACGCCCGCGCAAGC
ATCCAAGTTCTATCCCCAGACAATTGGTCAACTGAGCGGAATCTGTGGGC
GTGAAAAGGTCATCCAGACACCCTTTATCCACAACGGAATTGAAGTGGAG
CGGGGTCAGCTGCCCTGGATGGCCGCTCTTTTCGAGCACGTTGGCAGGGA
CTATAACTTTTTGTGCGGC
MXO03556.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:41:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9649-PA | 1515 | CG9649-RA | 1..861 | 9..869 | 4305 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:36:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9649-RA | 1713 | CG9649-RA | 136..1001 | 4..869 | 4315 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:36:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14216238..14216719 | 869..388 | 2410 | 100 | Minus |
| 3R | 32079331 | 3R | 14217530..14217747 | 221..4 | 1075 | 99.5 | Minus |
| 3R | 32079331 | 3R | 14216914..14217080 | 387..221 | 835 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:36:48 has no hits.
MXO03556.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:42:02 Download gff for
MXO03556.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9649-PA | 1..861 | 9..869 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:47:52 Download gff for
MXO03556.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9649-RA | 134..1001 | 1..869 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:13:32 Download gff for
MXO03556.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9649-RA | 134..1001 | 1..869 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:13:32 Download gff for
MXO03556.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14216238..14216719 | 388..869 | 100 | <- | Minus |
| 3R | 14216914..14217079 | 222..387 | 100 | <- | Minus |
| 3R | 14217530..14217748 | 1..221 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:47:52 Download gff for
MXO03556.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 10041960..10042441 | 388..869 | 100 | <- | Minus |
| arm_3R | 10042636..10042801 | 222..387 | 100 | <- | Minus |
| arm_3R | 10043252..10043470 | 1..221 | 98 | | Minus |
