MXO03558.5prime Sequence
837 bp (747 high quality bases) assembled on 2007-07-18
> MXO03558.5prime
CAGTCGACATGGACTGCAAATCGCGACGCGGCACCAAAATATCGGTGATC
GCCCTGGGAAGTGCCCTCTGTTTCGTCATGATGGCATACTTTGTGTTCGG
CGACAGCAACGACGAGCAGGGTTTGCGGAATCTACGCATGATATCCATAC
TGTTCCGACATGGTGCCAAGAATCCGAGTGGCTTCTATCCGTTGGATCCG
CACGCTGCCCACGACTGGCAGGGCGGGATGGGAGCCCTCACGCCGAAAGG
CAGCCTGCAGGCGTACAACCTGGGAAGGAATCTGCGCATGCGCTACTACC
GTCTGCTGCCTCCGAACAGCCTTTACACCCAGCAGCAGGTGAATGTGCTC
AGCTCGGCCGCGGAACGCTGTGTGATGAGCGCCCAGAGCGTCTTGGCCGG
CATGATGCCGCCGCTGGAGAACAAGAATGTGCTACCCATTCCCTGGCAGC
CGGTGGCCGTCAATACGCTATCTCGCAATGAAGATATCCTGTTGGCCCAA
AAGAAACCGTGCTTGAAATATGACCACATTCTGCAGAAGCTTTACAAATC
TCCGCCTCCTGAACTCCAGAAACTGAACGAGGACAACATGGAGCTGTACA
AATTGCTAACCAAAAACACAGGCAAGAACATTTCAAATGTACTGGACGTG
GAGCTACTCTATGGCACACTCAAAACCGAAGAGGAAGCTAATCTGGTGCT
GCCCGATTGGACTGAGAATATATACCCCGAGGAGATTAGGCCACTAGCTG
AACGTAGCTATATGCTATTCACCGAAACAAATCTAATGAAGCGGATTAAG
GGTGGCGCTTTTCTTACGGATATACTCAACAAAATGC
MXO03558.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:42:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6656-PA | 1188 | CG6656-RA | 1..829 | 9..837 | 4120 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:01:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6656-RA | 1542 | CG6656-RA | 198..1026 | 9..837 | 4130 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:01:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21876994..21877206 | 625..837 | 1050 | 99.5 | Plus |
| 3R | 32079331 | 3R | 21875490..21875630 | 9..149 | 705 | 100 | Plus |
| 3R | 32079331 | 3R | 21876761..21876898 | 489..626 | 690 | 100 | Plus |
| 3R | 32079331 | 3R | 21876347..21876476 | 245..374 | 650 | 100 | Plus |
| 3R | 32079331 | 3R | 21876574..21876688 | 374..488 | 575 | 100 | Plus |
| 3R | 32079331 | 3R | 21875715..21875810 | 150..245 | 480 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:01:34 has no hits.
MXO03558.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:42:08 Download gff for
MXO03558.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6656-PA | 1..829 | 9..837 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:53:30 Download gff for
MXO03558.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6656-RA | 198..1026 | 9..837 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:40:03 Download gff for
MXO03558.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6656-RA | 198..1026 | 9..837 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:40:03 Download gff for
MXO03558.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21875490..21875630 | 9..149 | 100 | -> | Plus |
| 3R | 21875715..21875810 | 150..245 | 100 | -> | Plus |
| 3R | 21876348..21876476 | 246..374 | 100 | -> | Plus |
| 3R | 21876575..21876688 | 375..488 | 100 | -> | Plus |
| 3R | 21876761..21876898 | 489..626 | 100 | -> | Plus |
| 3R | 21876996..21877206 | 627..837 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:53:30 Download gff for
MXO03558.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17701212..17701352 | 9..149 | 100 | -> | Plus |
| arm_3R | 17701437..17701532 | 150..245 | 100 | -> | Plus |
| arm_3R | 17702070..17702198 | 246..374 | 100 | -> | Plus |
| arm_3R | 17702297..17702410 | 375..488 | 100 | -> | Plus |
| arm_3R | 17702483..17702620 | 489..626 | 100 | -> | Plus |
| arm_3R | 17702718..17702928 | 627..837 | 99 | | Plus |
