MXO03559.5prime Sequence
874 bp (824 high quality bases) assembled on 2007-07-18
> MXO03559.5prime
CAGTCGACATGTGTCCGATTTCCACGGCTCTTTTTGTAATTGCGGCCATC
CTGGCCTTGATCTATGTCTTTCTAACATGGAACTTTAGCTACTGGAAGAA
GAGGGGCATTCCAACGGCCAAGTCATGGCCCTTTGTGGGCAGTTTTCCCA
GCGTTTTCACCCAGAAACGGAACGTAGTCTACGACATCGATGAGATCTAT
GAGCAGTACAAGAACACCGACAGCATTGTGGGAGTGTTTCAAACCAGAAT
TCCACAACTAATGGTCACAACTCCGGAATATGCGCACAAGATATATGTTA
GTGACTTCCGCAGCTTCCACGACAATGAGATGGCTAAGTTTACCGACAGC
AAAACGGATCCCATTTTGGCGAATAATCCGTTCGTATTGACTGGTGAGGC
CTGGAAAGAAAGACGCGCCGAAGTTACACCCGGACTTTCGGCAAATCGGG
TCAAAGCTGCCTATCCCGTCTCGCTGCGCGTTTGTAAAAAGTTTGTGGAA
TATATAAGGCGACAGAGCCTGATGGCCCCCGCCCAAGGACTAAATGCGAA
GGATCTCTGCTTGTGCTACACCACCGAAGTGATTTCCGATTGTGTCCTGG
GCATTTCCGCCCAGAGTTTCACGGATAATCCCACACCCATGGTGGGAATG
ACCAAGCGCGTCTTCGAACAGTCTTTTGGCTTCATTTTCTACACGGTGGT
CGCCAATCTATGGCCACCAATCACGAAATTCTACTCCGTTTCGCTGTTCG
CCAAGGACGTGGCTGCGTTCTTCTATGACCTCATGCAGAAGTGCATCCAA
GTTCGGCGGGAAAGTCCGGCGGCACAGCAGCGAGATGACTTCCTCAACTA
CATGTTGCAGTTGCAGGAGAAAAA
MXO03559.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:42:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10833-PA | 1509 | Cyp28d1-RA | 1..866 | 9..874 | 4330 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:28:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyp28d1-RA | 1617 | CG10833-RA | 42..908 | 8..874 | 4335 | 100 | Plus |
| Cyp28d2-RA | 1673 | CG6081-RA | 94..726 | 61..693 | 495 | 73.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:28:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5211190..5211615 | 449..874 | 2130 | 100 | Plus |
| 2L | 23513712 | 2L | 5210501..5210696 | 8..203 | 980 | 100 | Plus |
| 2L | 23513712 | 2L | 5210751..5210889 | 203..341 | 695 | 100 | Plus |
| 2L | 23513712 | 2L | 5210954..5211063 | 342..451 | 550 | 100 | Plus |
| 2L | 23513712 | 2L | 5208022..5208266 | 449..693 | 295 | 74.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:28:47 has no hits.
MXO03559.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:42:14 Download gff for
MXO03559.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10833-PA | 1..861 | 9..869 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:45:25 Download gff for
MXO03559.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp28d1-RA | 36..903 | 1..869 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:09:35 Download gff for
MXO03559.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp28d1-RA | 36..903 | 1..869 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:09:35 Download gff for
MXO03559.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5210751..5210889 | 203..341 | 100 | -> | Plus |
| 2L | 5210954..5211061 | 342..449 | 100 | -> | Plus |
| 2L | 5210495..5210695 | 1..202 | 98 | -> | Plus |
| 2L | 5211191..5211610 | 450..869 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:45:25 Download gff for
MXO03559.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5210495..5210695 | 1..202 | 98 | -> | Plus |
| arm_2L | 5210751..5210889 | 203..341 | 100 | -> | Plus |
| arm_2L | 5210954..5211061 | 342..449 | 100 | -> | Plus |
| arm_2L | 5211191..5211610 | 450..869 | 100 | | Plus |
