MXO03563.5prime Sequence
898 bp (855 high quality bases) assembled on 2007-07-18
> MXO03563.5prime
CAGTCGACATGGCGTTGGCGCTGCGCGTTGCCCGATGCGCCGCGATTCCG
GCCAACTGTTGGCCCCGCGATCGCCGGCGACTGTTACACCTGTGCAGCAG
CGCCAGCGATAAGAGGCCAACAGCTTTCTGCAGCAGGAACTACGCAACGA
AGCCCGAAGCAGCGGTTCCACCACAAATCAAGCGAAATGTGGCCGCCGAG
ATAACCAGCGTGGGTAAGGTCATCTACGAAACGGGCTGGGATGCCAACAA
GCCCATTGAAAAGCCAAAGGTCCGGCCCAGCAGCTCGTCGTCCACACAGC
CGACGCCGTCTAAGAAACCCGAAGACGAGAAGCGCAAGGAGCTGGACACT
GTGAAATCGAAACGGGATCAGATGCGAGACAATATGCAGGACTACATATT
CACCCGGTACTTCAACTATGTGAAGAACTACGACAAAGTGCTCGAAAAGA
ACTTCCCCAAGGCCATGCAGTTGTACAGGGTGTTCTTCGATGGCGTCAAG
GACTTTTTTGGCGACATGAAACGTTTCCTCAAGATTGCCCGCATTGCCAA
TGATTCGCCTCAAGGCATAAGAGCTTTGAATCGCCAGGAGCTGGAGCTGT
ACATGCAGATGCCAAGGGACATGATGAAGGTGGCACCAGCTCTGATCGGC
TGCTCCCTGCCCATGGTGGGCTATGCGTTCTTTCCCCTCGTCTTTTATTA
CCCCCGCTCCTTTCTCACTGCCCATTTCTGGACTCCGCAGCAGCGCTCCG
AGTTCCAGAGCTACTACATGAAGCGGCGATTATGCAATAACAAGGACGTC
TTTCGCTGCCTGCAGGACAAGCTCAAAGCGACGGCATCGCATCCCAAGCA
CTCGGCTTTTGCTGACATCCTGGGCCAGCTGGGCAGCGGCACACACCC
MXO03563.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:42:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5989-PA | 1311 | CG5989-RA | 1..890 | 9..898 | 4450 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:18:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5989-RA | 1567 | CG5989-RA | 153..1042 | 9..898 | 4450 | 100 | Plus |
| CG5989-RB | 1561 | CG5989-RB | 153..1036 | 9..898 | 4350 | 99.3 | Plus |
| CG5989-RC | 1534 | CG5989-RC | 241..1009 | 130..898 | 3845 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:18:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8603265..8603858 | 691..98 | 2970 | 100 | Minus |
| 3L | 28110227 | 3L | 8602997..8603203 | 898..692 | 1035 | 100 | Minus |
| 3L | 28110227 | 3L | 8603906..8603997 | 100..9 | 460 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:18:42 has no hits.
MXO03563.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:42:27 Download gff for
MXO03563.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5989-PA | 1..890 | 9..898 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:35:30 Download gff for
MXO03563.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5989-RA | 149..1042 | 1..898 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:56:39 Download gff for
MXO03563.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5989-RA | 149..1042 | 1..898 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:56:39 Download gff for
MXO03563.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8602997..8603203 | 692..898 | 100 | <- | Minus |
| 3L | 8603265..8603855 | 101..691 | 100 | <- | Minus |
| 3L | 8603906..8604001 | 1..100 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:35:30 Download gff for
MXO03563.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8596097..8596303 | 692..898 | 100 | <- | Minus |
| arm_3L | 8596365..8596955 | 101..691 | 100 | <- | Minus |
| arm_3L | 8597006..8597101 | 1..100 | 96 | | Minus |
