MXO03564.5prime Sequence
854 bp (741 high quality bases) assembled on 2007-07-18
> MXO03564.5prime
CAGTCGACATGTTAAGCAGCCTCGCCTCGTATCTCTTTGGATCAGCTACA
TCCGATTCCATTAGCCAAGAAGCCAATCCCGCCCAGAACCGAACGAACGC
CTCGAACGCGAACTCTAGCTCGAGTCCCGGCCCGACCAGCGATCCCGCTG
CAGGCGATGTAATTGAGGTCACCTCCTCGACGCCCTCGGTAGCGGGCAGC
AGTCGTGGGGCGGTGCGCGCCTCCAACGGCAAGCGGGGCAAGAACAGGCG
TGGCAAGCAGCAGCGGACCAACCAGCAGCAGCGGAAACAACAGCCAGCGA
TCACCAAATTGCTGACGCCCTCCGGCGAGATCGTCGACGAGGACTTCGAC
GAGGACGAATGGTACATTGTGGAGAAGGAAGACGAGGAGGACGACTCCCT
GCCACGCAGCGACTCCGAGGAGGAGCTCTCCGTGGTGGAGGTGTCGCAGC
CGCGGGGCGGTTCCAACAACGCCTCCTCTCCAATGGTGACCGTGGCCACT
GGCACGGCGTTCAACTGCCGCCGCCGGCAGGGCGTCAACTCGTGTTCCCT
GTACAGTGGGCCCCGGCCGCAGCAGCAACGCAACTATCTGCAACGCTCGC
GCGTCTCCCGGCCGCTGAGCATCAGCACCCTCAGCCCGCCCAGAAGTGTG
CCCGCCCTGGGGGCCGGCGATCATGACACGCTGACCCAGTCGCTGTACGT
GGCCTCGCCGAGCGGCAGCGACCAGGGTCAGGATCACGGCCAGAGTGCTA
ACGTGCTGATGGAGGAGTCCTGCATGTCCGTTTATCATAGTATTAGGTCC
ACCCAGGAGGGAACCGATAGTTTTGTTAATCTTGATCTCGGGGTGTCGAC
GGAG
MXO03564.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:42:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11347-PD | 1164 | CG11347-RD | 1..846 | 9..854 | 4205 | 99.8 | Plus |
| CG11347-PB | 1164 | CG11347-RB | 1..846 | 9..854 | 4205 | 99.8 | Plus |
| CG11347-PA | 1164 | CG11347-RA | 1..846 | 9..854 | 4205 | 99.8 | Plus |
| CG11347-PC | 822 | CG11347-RC | 32..504 | 382..854 | 2340 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:49:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| DOR-RE | 1906 | CG11347-RE | 381..1226 | 9..854 | 4215 | 99.9 | Plus |
| DOR-RA | 2022 | CG11347-RA | 497..1342 | 9..854 | 4215 | 99.9 | Plus |
| DOR-RB | 2311 | CG11347-RB | 404..1249 | 9..854 | 4215 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:49:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4418780..4419172 | 380..772 | 1950 | 99.7 | Plus |
| 3L | 28110227 | 3L | 4418122..4418494 | 9..381 | 1865 | 100 | Plus |
| 3L | 28110227 | 3L | 4419428..4419510 | 772..854 | 415 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:49:23 has no hits.
MXO03564.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:42:32 Download gff for
MXO03564.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11347-PA | 1..846 | 9..854 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:05:56 Download gff for
MXO03564.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| DOR-RB | 399..1249 | 3..854 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:41:24 Download gff for
MXO03564.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| DOR-RB | 399..1249 | 3..854 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:41:24 Download gff for
MXO03564.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4418117..4418494 | 3..381 | 99 | -> | Plus |
| 3L | 4418782..4419172 | 382..772 | 99 | -> | Plus |
| 3L | 4419429..4419510 | 773..854 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:05:56 Download gff for
MXO03564.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4418117..4418494 | 3..381 | 99 | -> | Plus |
| arm_3L | 4418782..4419172 | 382..772 | 99 | -> | Plus |
| arm_3L | 4419429..4419510 | 773..854 | 100 | | Plus |
