Clone MXO03566 Report

Search the DGRC for MXO03566

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:35
Well:66
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptCG31908-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO03566.5prime Sequence

891 bp (819 high quality bases) assembled on 2007-07-18

> MXO03566.5prime
CAGTCGACATGTCCCATGGCGAGGATGTGTTAGACAACTGGGAGGAAATC
GACGAGGATGGGCTCTCTATGACTCTGCAAACAAAGCTGCAGACGAGCGA
CCCACCTGTCAACAAAATGAAATTGCTCCAACGGCCGCAGAGCGTACAGG
AGTCCTCACAAATCCTGAGCAGCGGCGATGGTGGCGGCGGTGGTGGAAAC
GGGGGCGGGAATCCCCCGCCACGGCAGATCACCATTGCCCGGAAGCCCCA
AGTACCGCCAGCAGAGGTTGACTCATCTACCCAGCAGGAGCAACAGCAGC
AGCCCGTCATGATGGTGCTGCACAAGACGACCAATGACTACGATGCGGCC
ACCTATTGCACGCCCACCAGCAACCAGACCGTCAAGATACTGCGGCGGCC
CGCCCAGGCGGAGGAGCGGCGGGACATTAACGGAATGCGACCGAAGCAGC
CCATCAAGACGCTCAAGCAGCGAGAACAGGAGTACGCCGAGGCCAGGCTG
CGCATCCTGGGCGCTGCCAAAAACCCGGAGGATGACAAACCGGCCACTCC
CATCACGCCAGCTGTCAATAGCAGCAGTGTGGCTGTTTCGTCCGCGGCGC
CGCCTGTCACTCCCCCCTCTGCGATCAGCAACAACAACGTCATCAACAAC
AATAGTAGCCATCCAGGAGGCGGAATGCACCGCTCGAGTTCGGCACCGAA
AATGTCCCAAGTGACGCCGATGTATAATAACTACAACAGCTACTTCCCGG
GACTGCACAATCAGCCTGGCCTTAACTACTACTATCCGCATAACCCGCAA
CATCAGCATCAGCATCAGCAGCAACAGCAGCAGCAGCCGTCGCAGCATTT
TCATCAACGGTTGCCGCCGTACGGAGGCGGAAGATCGGGAC

MXO03566.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:42:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG31908-PA 1179 CG31908-RA 1..883 9..891 4340 99.6 Plus
CG31908-PB 1179 CG31908-RB 1..883 9..891 4340 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:01:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG31908-RC 2135 CG31908-RC 613..1495 9..891 4370 99.7 Plus
CG31908-RB 1821 CG31908-RB 299..1181 9..891 4370 99.7 Plus
CG31908-RA 2033 CG31908-RA 511..1393 9..891 4370 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:01:44
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7026156..7026636 542..62 2405 100 Minus
2L 23513712 2L 7025469..7025818 891..542 1705 99.1 Minus
2L 23513712 2L 7026724..7026777 62..9 270 100 Minus
Blast to na_te.dros performed 2014-11-28 22:01:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2638..2856 624..858 155 57.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6870..6917 793..837 134 79.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6755..6929 240..414 125 56.7 Plus
HMS-Beagle 7062 HMS-Beagle Beagle 7062bp 837..911 274..349 125 64.5 Plus

MXO03566.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:42:37 Download gff for MXO03566.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31908-PB 1..883 9..891 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:53:36 Download gff for MXO03566.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31908-RA 510..1402 1..891 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:40:09 Download gff for MXO03566.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31908-RA 501..1393 1..891 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:40:09 Download gff for MXO03566.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 7025469..7025818 542..891 99 <- Minus
2L 7026157..7026635 63..541 100 <- Minus
2L 7026724..7026785 1..62 93   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:53:36 Download gff for MXO03566.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7025469..7025818 542..891 99 <- Minus
arm_2L 7026157..7026635 63..541 100 <- Minus
arm_2L 7026724..7026785 1..62 93   Minus