MXO03566.5prime Sequence
891 bp (819 high quality bases) assembled on 2007-07-18
> MXO03566.5prime
CAGTCGACATGTCCCATGGCGAGGATGTGTTAGACAACTGGGAGGAAATC
GACGAGGATGGGCTCTCTATGACTCTGCAAACAAAGCTGCAGACGAGCGA
CCCACCTGTCAACAAAATGAAATTGCTCCAACGGCCGCAGAGCGTACAGG
AGTCCTCACAAATCCTGAGCAGCGGCGATGGTGGCGGCGGTGGTGGAAAC
GGGGGCGGGAATCCCCCGCCACGGCAGATCACCATTGCCCGGAAGCCCCA
AGTACCGCCAGCAGAGGTTGACTCATCTACCCAGCAGGAGCAACAGCAGC
AGCCCGTCATGATGGTGCTGCACAAGACGACCAATGACTACGATGCGGCC
ACCTATTGCACGCCCACCAGCAACCAGACCGTCAAGATACTGCGGCGGCC
CGCCCAGGCGGAGGAGCGGCGGGACATTAACGGAATGCGACCGAAGCAGC
CCATCAAGACGCTCAAGCAGCGAGAACAGGAGTACGCCGAGGCCAGGCTG
CGCATCCTGGGCGCTGCCAAAAACCCGGAGGATGACAAACCGGCCACTCC
CATCACGCCAGCTGTCAATAGCAGCAGTGTGGCTGTTTCGTCCGCGGCGC
CGCCTGTCACTCCCCCCTCTGCGATCAGCAACAACAACGTCATCAACAAC
AATAGTAGCCATCCAGGAGGCGGAATGCACCGCTCGAGTTCGGCACCGAA
AATGTCCCAAGTGACGCCGATGTATAATAACTACAACAGCTACTTCCCGG
GACTGCACAATCAGCCTGGCCTTAACTACTACTATCCGCATAACCCGCAA
CATCAGCATCAGCATCAGCAGCAACAGCAGCAGCAGCCGTCGCAGCATTT
TCATCAACGGTTGCCGCCGTACGGAGGCGGAAGATCGGGAC
MXO03566.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:42:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31908-PA | 1179 | CG31908-RA | 1..883 | 9..891 | 4340 | 99.6 | Plus |
CG31908-PB | 1179 | CG31908-RB | 1..883 | 9..891 | 4340 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:01:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31908-RC | 2135 | CG31908-RC | 613..1495 | 9..891 | 4370 | 99.7 | Plus |
CG31908-RB | 1821 | CG31908-RB | 299..1181 | 9..891 | 4370 | 99.7 | Plus |
CG31908-RA | 2033 | CG31908-RA | 511..1393 | 9..891 | 4370 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:01:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7026156..7026636 | 542..62 | 2405 | 100 | Minus |
2L | 23513712 | 2L | 7025469..7025818 | 891..542 | 1705 | 99.1 | Minus |
2L | 23513712 | 2L | 7026724..7026777 | 62..9 | 270 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 22:01:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2638..2856 | 624..858 | 155 | 57.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6870..6917 | 793..837 | 134 | 79.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6755..6929 | 240..414 | 125 | 56.7 | Plus |
HMS-Beagle | 7062 | HMS-Beagle Beagle 7062bp | 837..911 | 274..349 | 125 | 64.5 | Plus |
MXO03566.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:42:37 Download gff for
MXO03566.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31908-PB | 1..883 | 9..891 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:53:36 Download gff for
MXO03566.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31908-RA | 510..1402 | 1..891 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:40:09 Download gff for
MXO03566.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31908-RA | 501..1393 | 1..891 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:40:09 Download gff for
MXO03566.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7025469..7025818 | 542..891 | 99 | <- | Minus |
2L | 7026157..7026635 | 63..541 | 100 | <- | Minus |
2L | 7026724..7026785 | 1..62 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:53:36 Download gff for
MXO03566.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7025469..7025818 | 542..891 | 99 | <- | Minus |
arm_2L | 7026157..7026635 | 63..541 | 100 | <- | Minus |
arm_2L | 7026724..7026785 | 1..62 | 93 | | Minus |