MXO03568.5prime Sequence
865 bp (754 high quality bases) assembled on 2007-07-18
> MXO03568.5prime
CAGTCGACATGTCCACCACCACAACAGCATCCATAGAGGGCTATAAGCTC
GGCAAGGTCATCATCGAGGGCAAAACCAAACAGGTGTACGATCTGCCAGA
GCAGCCAGGACTTTGCCTGCTCCTCAGCAAGGATCGCATCACCGCCGGCG
ATGGTGTCAAAGCACATGATCTGGCCGGCAAGGCGGAGATCTCCAATACC
ACCAACGGTCAGGTCTTCCGGCTGCTCAACGAGGCAGGCATTCGCACCGC
CTATGTGAAGCAGTGCGGCGCCAAGGCCTTCATCGCCCGCAAGTGCCAGA
TGATACCCATTGAGTGGGTGACCCGTCGCCTGGCCACCGGTTCGTTCCTC
AAGCGCAATGTCGGCGTGCCCGAGGGCTACAGGTTCTCGCCGCCCAAACA
GGAGACGTTCTTCAAGGATGATGCCAACCACGATCCCCAGTGGAGCGAGG
AGCAAATTGTCTCCGCCAAGTTCGAGCTAAATGGCCTGGTGATCGGCCAA
GATGAGGTGGACATTATGCGTAGAACCACACTGCTGGTCTTCGAGATTCT
CGAGAGGGCATGGCAGACCAAGAATTGNCGCCCTGATCGACATGAAAGTG
GAGTTCGGTATCTGCGACGATGGCAACATAGTTCTGGCCGATATCATTGA
TTCCGATTCGTGGCGCTTGTGGCCAGCGGGTGACAAGCGTTTGATGGTCG
ACAAGCAGGTGTATCGCAATCTGGCATCGGTGACGGCCAGCGATTTGGAT
ACCGTAAAGAGGAACTTCATTTGGGTGGCCGAACAACTGGCTGATATTGT
GCCCAAGAANGATCACCTGGTTGTCATTCTGATGGGCAGTGCTTCCGATA
TATCGCACAGCGAGA
MXO03568.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:42:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3989-PA | 1290 | ade5-RA | 1..569 | 9..577 | 2845 | 100 | Plus |
| CG3989-PA | 1290 | ade5-RA | 570..856 | 579..865 | 1416 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:45:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ade5-RA | 1826 | CG3989-RA | 241..1100 | 5..865 | 4254 | 99.7 | Plus |
| ade5-RB | 2547 | CG3989-RB | 241..1097 | 5..865 | 4199 | 99.3 | Plus |
| CG40801-RB | 429 | CG40801-RB | 58..403 | 36..385 | 1530 | 96 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:45:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 12758486..12758855 | 865..495 | 1794 | 99.5 | Minus |
| X | 23542271 | X | 12759711..12759915 | 238..34 | 1025 | 100 | Minus |
| Y | 3667352 | Y | 3059275..3059477 | 238..36 | 925 | 97 | Minus |
| Y | 3667352 | Y | 3231313..3231515 | 36..238 | 925 | 97 | Plus |
| Y | 3667352 | Y | 3267332..3267534 | 238..36 | 910 | 96.6 | Minus |
| U | 3151297 | U | 2460018..2460220 | 36..238 | 910 | 96.6 | Plus |
| X | 23542271 | X | 12759460..12759610 | 385..235 | 755 | 100 | Minus |
| Y | 3667352 | Y | 3267089..3267236 | 385..234 | 620 | 95.4 | Minus |
| X | 23542271 | X | 12758922..12759038 | 496..380 | 585 | 100 | Minus |
| Y | 3667352 | Y | 3059062..3059204 | 385..239 | 580 | 94.6 | Minus |
| Y | 3667352 | Y | 3091728..3091870 | 178..36 | 565 | 93 | Minus |
| Y | 3667352 | Y | 3205824..3205966 | 36..178 | 565 | 93 | Plus |
| Y | 3667352 | Y | 3231586..3231711 | 239..368 | 510 | 94.6 | Plus |
Blast to na_te.dros performed 2014-11-28 20:45:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dmir\TRAM | 3452 | Dmir\TRAM DMTRAM 3452bp Derived from Y08905 (Rel. 51, Last updated, Version 3). | 1485..1524 | 304..265 | 110 | 75 | Minus |
MXO03568.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:42:46 Download gff for
MXO03568.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3989-PA | 1..855 | 9..864 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:41:02 Download gff for
MXO03568.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ade5-RA | 238..1099 | 1..864 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:13:48 Download gff for
MXO03568.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ade5-RA | 238..1099 | 1..864 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:13:48 Download gff for
MXO03568.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 12758487..12758854 | 496..864 | 99 | <- | Minus |
| X | 12758923..12759035 | 383..495 | 100 | <- | Minus |
| X | 12759463..12759607 | 238..382 | 100 | <- | Minus |
| X | 12759712..12759915 | 34..237 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:41:02 Download gff for
MXO03568.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 12652520..12652887 | 496..864 | 99 | <- | Minus |
| arm_X | 12652956..12653068 | 383..495 | 100 | <- | Minus |
| arm_X | 12653496..12653640 | 238..382 | 100 | <- | Minus |
| arm_X | 12653745..12653948 | 34..237 | 100 | <- | Minus |
