MXO03570.5prime Sequence
840 bp (731 high quality bases) assembled on 2007-07-18
> MXO03570.5prime
CAGTCGACATGTCTGCCGCAACCAAAGGTATCTATATTGTGGCTGCCAAG
CGTACGGCCTTCGGAACCTTCGGTGGATCCTTGAAGGGCATCAACCAGAC
CCAATTGCAAACCACGGCGGCCAAGGCTGCCCTGGATGCTGCCGGTCTTA
AGGGTGAGCAAGTGGACACCGTCATCGTGGGAAATGTGATCGCGTCCTCC
TCCACCGATGGTATTTATGTGCCCCGTCATGTGGGTCTCAACTGCGGTGT
GCCCATCGAGAAGCCCGCCCTTGGAATCAACCGGCTTTGCGGTTCCGGCT
TCCAGTCGATCGTAAACGGAGCCCAGGACATCCTGGTCGGCGGTGCCAAG
ATAGCCCTTACCGGCGGCGTGGAGAACATGTCACAGAGCCCTTTCATTGC
CCGTAATGTGAGATTCGGAACCACCTTGGGTGCCAGCTACAATCTGGAGG
ATGCTCTATGGGCTGGCCTCACCGATACCTACTGCAAGCTGCCCATGGCT
CTGACCGCTGAGAACCTGGCCGATCAGTACAAGATCAGTAGGGAGCGTGT
GGATGAGTTCTCTCTGCTCTCGCAAAAGAACTGGGAGAAGGGTCAGAAGG
AGGGAGCATTCAATGCCGAGATCACACCCATCAAACTTAAGGTCAAGGGA
AAGGAAGTGGACTTTGTGGTGGACGAGCACCCACGTCCCAAGACCACCAT
CGAGGGTCTGAACAAGCTGCCTTCGCTGTTTAAGAAGAACGGCGTTGTGA
CTGCCGGAACAGCATCCGGAATCTGTGATGGTGCCTCCGCAGTGATCGTG
GCCTCCGAGGAGGCGCTTAAGGAGTACAACCTGAAGCCTC
MXO03570.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:42:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4600-PA | 1197 | yip2-RA | 1..832 | 9..840 | 4160 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:29:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| yip2-RA | 1391 | CG4600-RA | 96..927 | 9..840 | 4160 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:29:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 9916051..9916697 | 194..840 | 3235 | 100 | Plus |
| 2L | 23513712 | 2L | 9915621..9915791 | 24..194 | 855 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 22:29:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rt1a | 5108 | Rt1a DME278684 5108bp Derived from AJ278684 (AJ278684.1) (Rel. 64, Last updated, Version 1). | 1665..1710 | 465..510 | 113 | 71.7 | Plus |
MXO03570.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:43:04 Download gff for
MXO03570.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4600-PA | 1..832 | 9..840 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:45:34 Download gff for
MXO03570.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yip2-RA | 96..927 | 9..840 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:09:51 Download gff for
MXO03570.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yip2-RA | 96..927 | 9..840 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:09:51 Download gff for
MXO03570.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 9915348..9915366 | 9..27 | 100 | -> | Plus |
| 2L | 9915625..9915791 | 28..194 | 100 | -> | Plus |
| 2L | 9916052..9916697 | 195..840 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:45:34 Download gff for
MXO03570.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 9915348..9915366 | 9..27 | 100 | -> | Plus |
| arm_2L | 9915625..9915791 | 28..194 | 100 | -> | Plus |
| arm_2L | 9916052..9916697 | 195..840 | 100 | | Plus |
