MXO03571.5prime Sequence
852 bp (788 high quality bases) assembled on 2007-07-18
> MXO03571.5prime
CAGTCGACATGAGTGTCGCTGCAATGACTATGGACGATCAAAGACCCTGT
ATGAACAGTTACGACAAAATGCCCCCGACCAAATACGAGCAAAACCTAAA
TATCCTAAACAGCAGCCAAAACAGTGGGGCCACTGGCGGCCCCGCCTCCC
CAACGCCCTCCGGCTTGGAGGACCACCATCATCATCACCATCCGCATCCG
CACCATCATCACCATCAGGAGCAGCAGCAGCAGCAGCAGCAACAGCAACA
CTTGCAGCAGCAGCAACAACAGCAGCAGCAGCAACATGCAGCAGCTGTTG
CAGAGGCTGTTGCAGCCGCCGAACAGCGACAGCGCTTGCTCGAAGATGAG
ATCGAGAATCTCAAGCTGGAACAGGTCCGCATGGCTCAGCAATGCGCGGA
CGCCCAGCGACGCGAGAAGATCCTCATGCGACGGCTGGCCAACAAGGAGC
AAGAATTCCAGGACTATGTGAGCCAAATTGCCGAGTACAAGGCCCAACAG
GCGCCAACTGCCCTCGCATTGCGCACTGCTCTGCTCGATCCTGCGGTCAA
TCTCCTGTTCGAGCGGCTCAAGAAGGAACTTAAGGCCACCAAGGCCAAGC
TGGAGGAGACCCAGAACGAGCTGTCCGCATGGAAGTTCACGCCGGACTCT
AATACCGGCAAACGCCTAATGGCCAAGTGCCGACTGCTCTATCAGGAGAA
CGAGGAGCTGGGCAAGATGACCTCCAACGGCAGACTGGCCAAGCTGGAGA
CCGAACTGGCCATGCAGAAGAGCTTCAGCGAAGAGGTCAAGACATCGCAG
TCGGAGTTGGACGACTTCCTGCAGGAGCTGGACGAGGATGTGGAGGGCAT
GC
MXO03571.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:43:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6315-PA | 1611 | fl(2)d-RA | 1..844 | 9..852 | 4195 | 99.8 | Plus |
| CG6315-PB | 1239 | fl(2)d-RB | 1..472 | 381..852 | 2335 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:48:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fl(2)d-RA | 2567 | CG6315-RA | 426..1269 | 9..852 | 4205 | 99.9 | Plus |
| fl(2)d-RD | 2485 | CG6315-RD | 680..1187 | 345..852 | 2525 | 99.8 | Plus |
| fl(2)d-RC | 2435 | CG6315-RC | 630..1137 | 345..852 | 2525 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:48:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13823792..13824128 | 345..9 | 1685 | 100 | Minus |
| 2R | 25286936 | 2R | 13821036..13821370 | 804..470 | 1660 | 99.7 | Minus |
| 2R | 25286936 | 2R | 13821433..13821563 | 470..340 | 640 | 99.2 | Minus |
| 2R | 25286936 | 2R | 13820922..13820970 | 852..804 | 245 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:48:49 has no hits.
MXO03571.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:43:11 Download gff for
MXO03571.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6315-PA | 1..844 | 9..852 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:22:09 Download gff for
MXO03571.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fl(2)d-RA | 426..1269 | 9..852 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:37:45 Download gff for
MXO03571.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fl(2)d-RA | 426..1269 | 9..852 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:37:45 Download gff for
MXO03571.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13820922..13820969 | 805..852 | 100 | <- | Minus |
| 2R | 13821036..13821369 | 471..804 | 99 | <- | Minus |
| 2R | 13821433..13821557 | 346..470 | 100 | <- | Minus |
| 2R | 13823792..13824128 | 9..345 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:22:09 Download gff for
MXO03571.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9708427..9708474 | 805..852 | 100 | <- | Minus |
| arm_2R | 9708541..9708874 | 471..804 | 99 | <- | Minus |
| arm_2R | 9708938..9709062 | 346..470 | 100 | <- | Minus |
| arm_2R | 9711297..9711633 | 9..345 | 100 | | Minus |
