MXO03572.5prime Sequence
796 bp (794 high quality bases) assembled on 2007-07-18
> MXO03572.5prime
CAGTCGACATGAGCTTAGGCAACGCCAGGCCATTGGTCTCCGTGTACACG
GAAAAGAACGAGCCAGCCAAGGACAAGAACATATGCCTGCCGGCAGTGTT
CAAGGCGCCCATTCGTCCGGATGTGGTCAACGAGGTTCACCAGCTGCTCC
GCCGCAACAACCGACAGGCCTACGCCGTCAGCGAGCTGGCTGGTCACCAG
ACCTCCGCCGAGTCCTGGGGTACCGGACGTGCTGTGGCCCGTATTCCCCG
TGTGCGTGGTGGCGGTACCCACCGTTCCGGCCAGGGAGCCTTCGGCAACA
TGTGCCGTGGTGGACGCATGTTCGCCCCCACCAAGACGTTCCGTCGCTGG
CACCGCAAGGTGAATGTCAACCAGCGTCGCTACGCCCTGGTGTCGGCCAT
CGCCGCCTCAGGAGTGCCAGCTCTGGTCCAGTCCAAGGGACATGTCATCG
ACGGCGTCTCCGAGTTCCCGCTGGTCGTGTCCGATGAGGTGCAAAAGGTC
CAGAAGACCAAGCAGGCTGTCATCTTCCTGCGTCGCCTGAAGATCTGGGC
TGACATCCAGAAGGTGTACAAGTCGCAGCGCTTCCGTGCTGGCCGTGGTA
CCATGCGCGACCGTCGCCGCATCGCTCGCCGTGGTCCCCTGGTGGTCTAC
GACAAGGACGAGGGTCTGCGCAAGGCCTTCCGCAACATCCCCGGCATTGA
GACCATCAACGTGGACAAGCTCAATCTGCTGAAGCTGGCCCCCGGCGGTC
ATGTCGGTCGCTTTGTCATCTGGACCGAGTCGGCTTTCGCCCGCCT
MXO03572.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:43:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5502-PA | 1206 | RpL4-RA | 1..788 | 9..796 | 3940 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:37:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpL4-RA | 1400 | CG5502-RA | 97..884 | 9..796 | 3940 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:37:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27923369..27923743 | 192..566 | 1875 | 100 | Plus |
| 3R | 32079331 | 3R | 27924138..27924372 | 562..796 | 1175 | 100 | Plus |
| 3R | 32079331 | 3R | 27923124..27923307 | 11..194 | 920 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:37:23 has no hits.
MXO03572.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:43:18 Download gff for
MXO03572.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5502-PA | 1..788 | 9..796 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:48:04 Download gff for
MXO03572.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL4-RA | 89..884 | 1..796 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:13:43 Download gff for
MXO03572.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL4-RA | 89..884 | 1..796 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:13:43 Download gff for
MXO03572.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27923122..27923305 | 8..192 | 99 | -> | Plus |
| 3R | 27923370..27923740 | 193..563 | 100 | -> | Plus |
| 3R | 27924140..27924372 | 564..796 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:48:04 Download gff for
MXO03572.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 23748844..23749027 | 8..192 | 99 | -> | Plus |
| arm_3R | 23749092..23749462 | 193..563 | 100 | -> | Plus |
| arm_3R | 23749862..23750094 | 564..796 | 100 | | Plus |
