MXO03574.5prime Sequence
885 bp (753 high quality bases) assembled on 2007-07-18
> MXO03574.5prime
CAGTCGACATGTCCATCTACGCCGACGTTCCAAAAGGACCCGCCATCGAG
GTCTTCGCCCTGACGCAGGCCTTCAAGGACGACAGCAATCCCAACAAGGT
CAATTTGTCGGTGGGCGCTTACAGGACAGATGCTGGAGTTCCTTGGGTTT
TGCCTGTGGTGCGCAAGACGGAAATCAGCATTGCCAGCGATGAGCAGGTT
AACCACGAGTATTTGCCAGTGACTGGACTCGAAACATTCACCAATGCGGC
CACTGAATTGGTTCTGGGTGCCGATTCCCCAGCCATCAAGGAGAATCGCG
CCTTTGGAGTGCAGACCATTTCGGGCACGGGTGCCCTGCGCGTTGCCGCC
GATTTCCTGCACACACAACTGAATCGCAATGTGGTTTACTACTCGAACCC
CACCTGGGAGAATCACCACAAGATCTTTTGCGATGCCGGCTTTACGACCG
TTAAATCGTACCGCTACTGGGACCAAAATAAACGCGAGTTGGACTTCAAG
AACATGCTGGCCGATCTGAACGATGCTCCGCCCGGTGCTGTGATCATTCT
GCACGCCTGTGCCCACATCCCACCGGCATTGATCCCACCCAGGAGCAGTG
GACTGAGCTGGCCGATCTGATGGAGAAAAAGAAGTTGTTCCCGCTGTTCG
ACTCGGCTTACCAGGGCTTTGCCAGTGGTGATCCCGATCGCGATGCCTGG
GCCGCTAGGTACTTCGTGCAGCGTGGCTTCGAGCTCTTCATCTGCCAGTC
GTTCGCCAAGAACTTTGGCCTCTACTGCGAACGTACCGGCAATCTGGCTG
TGGTGCAAAAGAATGGTGCTACCAAGGCAGCGGTTCACTCTCAGCTGACG
CTGCTCATTCGTGGACAGTACTCGAATCCGCCCCG
MXO03574.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:43:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8430-PB | 1314 | Got1-RB | 64..622 | 9..567 | 2795 | 100 | Plus |
| CG8430-PA | 1251 | Got1-RA | 1..559 | 9..567 | 2795 | 100 | Plus |
| CG8430-PB | 1314 | Got1-RB | 623..939 | 567..883 | 1560 | 99.6 | Plus |
| CG8430-PA | 1251 | Got1-RA | 560..876 | 567..883 | 1560 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:48:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Got1-RA | 1683 | CG8430-RA | 98..973 | 9..883 | 4340 | 99.8 | Plus |
| Got1-RB | 1682 | CG8430-RB | 97..972 | 9..883 | 4340 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:48:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16140634..16141218 | 300..883 | 2860 | 99.7 | Plus |
| 2R | 25286936 | 2R | 16140329..16140438 | 117..226 | 550 | 100 | Plus |
| 2R | 25286936 | 2R | 16138776..16138884 | 9..117 | 545 | 100 | Plus |
| 2R | 25286936 | 2R | 16140499..16140574 | 225..300 | 380 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:48:52 has no hits.
MXO03574.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:43:26 Download gff for
MXO03574.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8430-PA | 1..877 | 9..885 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:22:11 Download gff for
MXO03574.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Got1-RB | 88..973 | 1..885 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:37:46 Download gff for
MXO03574.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Got1-RB | 88..973 | 1..885 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:37:46 Download gff for
MXO03574.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16138767..16138884 | 1..117 | 96 | -> | Plus |
| 2R | 16140330..16140437 | 118..225 | 100 | -> | Plus |
| 2R | 16140500..16140573 | 226..299 | 100 | -> | Plus |
| 2R | 16140634..16141219 | 300..885 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:22:11 Download gff for
MXO03574.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12026272..12026389 | 1..117 | 96 | -> | Plus |
| arm_2R | 12027835..12027942 | 118..225 | 100 | -> | Plus |
| arm_2R | 12028005..12028078 | 226..299 | 100 | -> | Plus |
| arm_2R | 12028139..12028724 | 300..885 | 99 | | Plus |
