MXO03575.5prime Sequence
588 bp (588 high quality bases) assembled on 2007-07-18
> MXO03575.5prime
CAGTCGACATGGCGGACAATGTCTTCAAGTCGCACGATATCGGGCTGCGG
GCGCAGAAGAAGATCCTCTCACGCATGGCCACAAAAAACATCGCCAAGAC
CTTCATCGATGGCACGACGGCGTCGCTGCTGGACAACCTCTACAGGCTCT
GCAAGATGCACACGGGGAACAAGGCCAAGGCGGAGAAGCTGATCAAGAAC
ATCATCAAGATTGTGATCAAGATCGGTGTGCTCCACCGGAACAATCAGTT
CAGCGACGAGGAGCTGCAGAAGGCGGAGCTCTTTAAGAGAAAGTTTCAAA
ACACGCAGCTGTCCATCATATCATTCTACGAAGTGGACTTCACGTTCGAC
CTGCCGTACCTGCAAAAGTCAATAGCCGAATCGCAAGTGGCGCTGAAGTC
GATTGTGCAGCCGCATCTCACAGAAAAGTCGCTGGGCCGCATCGACGAGG
TGTTCGATTTCTTCGGCGAGGAGGCGCTGCTGGAGACGGCTTTCCGACCA
GATTCCCCCTACCGCGAGGTGATGGGAAAGATTGTGGCGGACATAAACGC
AGCCATGGAAACGGGAGATATCGCAAGCTTTCTAGACC
MXO03575.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:43:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4091-PC | 633 | CG4091-RC | 66..630 | 8..572 | 2825 | 100 | Plus |
| CG4091-PA | 567 | CG4091-RA | 1..564 | 9..572 | 2820 | 100 | Plus |
| CG4091-PB | 567 | CG4091-RB | 1..564 | 9..572 | 2820 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:26:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4091-RB | 1857 | CG4091-RB | 274..838 | 8..572 | 2825 | 100 | Plus |
| CG4091-RC | 1950 | CG4091-RC | 367..931 | 8..572 | 2825 | 100 | Plus |
| CG4091-RA | 1881 | CG4091-RA | 298..862 | 8..572 | 2825 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:26:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23700298..23700589 | 299..8 | 1460 | 100 | Minus |
| 2R | 25286936 | 2R | 23699968..23700247 | 572..293 | 1370 | 99.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:26:50 has no hits.
MXO03575.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:43:32 Download gff for
MXO03575.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4091-PC | 62..633 | 1..575 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:49:46 Download gff for
MXO03575.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4091-RA | 294..862 | 1..572 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:08:48 Download gff for
MXO03575.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4091-RA | 294..862 | 1..572 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:08:48 Download gff for
MXO03575.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23699968..23700240 | 300..572 | 100 | <- | Minus |
| 2R | 23700298..23700592 | 1..299 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:49:46 Download gff for
MXO03575.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19587491..19587763 | 300..572 | 100 | <- | Minus |
| arm_2R | 19587821..19588115 | 1..299 | 98 | | Minus |
