MXO03576.5prime Sequence
694 bp (583 high quality bases) assembled on 2007-07-18
> MXO03576.5prime
CAATCGACATGGCCGACAATGACTATCTTTTGGACTACGAGGATGAGGAG
CAGACCGAGACCACTGCGGTCGAAAACCAGGAGGCCCCCAAGAAGGATGT
CTAGGGCACCTATGTGTCCATTCACAGTTCCGGCTTCCGCGATTTCCTCC
TGAAACCGGAGATCCTGCGCGCCATCGTGGACTGCGGCTTCTAGCATCCC
TCGGAGGTTCAGCACGAGTGCATTCCGCAGGCCGTACTGGGCATGGACAT
CCTCTGTCAGGCCAAGTCCGGCATGGGTAAGACCGCCGTCTTCGTTCTGG
CCACGCTGCATCAGCTGGAGCCGTCTGGACAACAACACCTGCCACGTCCT
GGTCATGTGCCACACCCGCGAGCTGGCCTTCCAGATCAACAAGGAGTATG
AGCGATTCTCCAAGTACATGCCCACAGTCAAGGTGGCTGTCTTCTTTGGC
GGAATGGCTATTCAAAAGGACGAGGAGACCCTCAAGAGCGGCACCCCGCA
TATTGTGGTGGGCACCCCTGGCCGAATTCTCGCCCTCATTCGCAACAAGA
AACTTAATCTGAAGCTTTTGAAGCACTTTGTGCTCGACGAGTGCGACAAG
ATGCTGGAGCAACTGGATATGCGTCGTGACGTTCAAGAGATTTTCCGTAG
CACGCCGCACGGCAAACAAGTGATGATGTTCTCTGCCACATTGA
MXO03576.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:43:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7269-PC | 1275 | Hel25E-RC | 318..685 | 327..694 | 1790 | 99.4 | Plus |
| CG7269-PA | 1275 | Hel25E-RA | 318..685 | 327..694 | 1790 | 99.4 | Plus |
| CG7269-PB | 1275 | Hel25E-RB | 318..685 | 327..694 | 1790 | 99.4 | Plus |
| CG7269-PC | 1275 | Hel25E-RC | 1..317 | 9..325 | 1485 | 98.7 | Plus |
| CG7269-PA | 1275 | Hel25E-RA | 1..317 | 9..325 | 1485 | 98.7 | Plus |
| CG7269-PB | 1275 | Hel25E-RB | 1..317 | 9..325 | 1485 | 98.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:18:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hel25E-RD | 2270 | CG7269-RD | 188..872 | 9..694 | 3315 | 99 | Plus |
| Hel25E-RB | 1657 | CG7269-RB | 78..762 | 9..694 | 3315 | 99 | Plus |
| Hel25E-RA | 1596 | CG7269-RA | 188..872 | 9..694 | 3315 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:18:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5541430..5541657 | 435..207 | 1065 | 98.7 | Minus |
| 2L | 23513712 | 2L | 5541723..5541921 | 207..9 | 950 | 98.5 | Minus |
| 2L | 23513712 | 2L | 5541153..5541338 | 616..431 | 915 | 99.5 | Minus |
| 2L | 23513712 | 2L | 5541013..5541091 | 694..616 | 395 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:18:45 has no hits.
MXO03576.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:43:39 Download gff for
MXO03576.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7269-PB | 1..684 | 9..693 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:35:32 Download gff for
MXO03576.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hel25E-RA | 183..871 | 1..693 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:56:42 Download gff for
MXO03576.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hel25E-RA | 183..871 | 1..693 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:56:42 Download gff for
MXO03576.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5541014..5541090 | 617..693 | 100 | <- | Minus |
| 2L | 5541153..5541336 | 433..616 | 99 | <- | Minus |
| 2L | 5541433..5541656 | 208..432 | 98 | <- | Minus |
| 2L | 5541723..5541926 | 1..207 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:35:32 Download gff for
MXO03576.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5541014..5541090 | 617..693 | 100 | <- | Minus |
| arm_2L | 5541153..5541336 | 433..616 | 99 | <- | Minus |
| arm_2L | 5541433..5541656 | 208..432 | 98 | <- | Minus |
| arm_2L | 5541723..5541926 | 1..207 | 96 | | Minus |
