MXO03578.5prime Sequence
923 bp (733 high quality bases) assembled on 2007-07-18
> MXO03578.5prime
CAGTCGACATGTACAACGACGAGGTGCGAACGCCGCAAGCCCTCAAGAAT
CGATACATTACAAATGTGAACGGATTGAAGTGCCGGGCGCGCCGTAACAG
CCACTCGAACAGCAGCAACTCGTCGGCGGCGTCGGCAACGCCAACGAATG
GCGGCAAAGAAAATGGAAAATACAGCCCCCAGATGTCGGGAAATGTGTGC
ACCCCGCCCCCGAAAAGGCTGCACAAGGTGCGGAATCCCTTCGAAGGAGC
GATGGCCGATCGTTTACACCTGCCACTGATCGCCAGCCCCTCACTTTTCC
GCTCGCGGACACCCCAACTCTCGTCCACCCAGTTCGAGTGGAACATTGAC
GAGGTCTCCCAACTAAAACCCGCCGACGTGGAGCCCCATGAAACCCAGTT
CCACGATTCCCCCGATCCCGAGCAGGAATCCAAGGCCCAGTTGGCCATCA
GTGCCTTTTTCAAGGAGTCACTCATTGTGCCCAGTCCGGTGGATTGCCCA
TTGCGAAAACAGCGCATAATACTCAATTGCAGCGAGGACAACACTCCCAT
ATCGAATAAGTCGCGAAGGATGCNGGGATTGCGAGGTGCAAACGGAACTT
ACTCTTGCCGCCGATATTGCCAAAAGCCCTAGAGGATGCCCTGCGTCCGT
ACTTCCAGCCACATTTGGCTGGCCGCTTGTCTGGCAGGAGCAAGTCAAGT
GGTGGTCCCGACATCTTTAATAGTTCCATGCGCCGGAAACTCTTCGATCT
GCACAATGTCATTGTTTTGGGCGAACAGGACACGGCAGAGCCATCGAGGT
CCATGGTGGGCTCCAGTCCGCAGGGCAAGCAACAATGTTCGCTGGCAGAC
TGTCGGATTCCGCATCCGGGGGAAATAGCTTCGGCTGCCTTTCACCCATT
AGAACCTATGCCGACTGCCGCCT
MXO03578.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:43:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6897-PA | 1620 | CG6897-RA | 1..565 | 9..573 | 2825 | 100 | Plus |
| CG6897-PA | 1620 | CG6897-RA | 595..822 | 605..832 | 1140 | 100 | Plus |
| CG6897-PA | 1620 | CG6897-RA | 822..895 | 831..904 | 320 | 97.2 | Plus |
| CG6897-PA | 1620 | CG6897-RA | 566..594 | 575..603 | 145 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:48:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| bora-RA | 2002 | CG6897-RA | 96..1010 | 9..923 | 4440 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:48:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18623120..18623759 | 284..923 | 2965 | 98.9 | Plus |
| 3L | 28110227 | 3L | 18622787..18623064 | 9..286 | 1390 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:48:55 has no hits.
MXO03578.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:43:45 Download gff for
MXO03578.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6897-PA | 1..915 | 9..923 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:22:14 Download gff for
MXO03578.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bora-RA | 96..1010 | 9..923 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:37:47 Download gff for
MXO03578.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bora-RA | 96..1010 | 9..923 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:37:47 Download gff for
MXO03578.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 18622787..18623064 | 9..286 | 100 | -> | Plus |
| 3L | 18623123..18623759 | 287..923 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:22:14 Download gff for
MXO03578.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18615887..18616164 | 9..286 | 100 | -> | Plus |
| arm_3L | 18616223..18616859 | 287..923 | 98 | | Plus |
