MXO03579.5prime Sequence
772 bp (440 high quality bases) assembled on 2007-07-18
> MXO03579.5prime
CAGTCGACATGGCACGCGACACACAAGGAGCGCAGGGAACCCAGAGTCAG
GCCTCCTATATCTGGACGCAGGTGGAGAGCCAGCCGATGGAGAAGATAGT
CTGGGGTCGATTGTACGGCAAGAACATTAATATCAAATCGCTGGATCTCA
ACAACGACGAGTTCACCGCAGGACGAGGGGAGGCCAACGACTTGATCCTC
ACGCTCAACGATTTGCCCGAGAAAATCCTGACGCGCATTTCCAAAGTGCT
TTTTATCATAAAGCGGGCAAACTGCGAACTTACCAATCCAGTTTATATTC
AGGATCTCTCACGCAACGGGACGTTTGTGAATAACGAGAAAATTGGCACA
AACAGGATGCGAATCCTAAAGAATGACGACGTAATTTCCCTGTCCCACCC
AACGTACAAAGCCTTTGTATTCAAGGATCTCAGCCCGAATGAGTCGATCG
GGCTTCCCGAGGAGATTAACAAGACGTATTATGTAAATCGCATGCTGGGA
TCTGGAGCGTACGGACTGGTGCGTTTGGTCTATGACACCCGCACCTGCCA
GCAGTTTGCGATGAAATCGTTAACAAGAATATGCTCTCTGGGGCGCGACC
CATTACCGATTTCAGTGATCCCGACCGGGTGCTGAACGAAGCCAAGATTA
TGAAGAATCTTTCTCATCCGTGCGTGGTTCGCATGCACGACATCGTGGAC
AAGCCGGATTCTGTGTATATGGTGCTGGAGTTTATGCGCGGCGGCGACCT
GCTTAACCGGATCATCATCAAC
MXO03579.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:43:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10895-PB | 1380 | lok-RB | 1..558 | 9..566 | 2665 | 99.1 | Plus |
| CG10895-PC | 1380 | lok-RC | 1..558 | 9..566 | 2665 | 99.1 | Plus |
| CG10895-PA | 1431 | lok-RA | 187..609 | 144..566 | 2065 | 99.5 | Plus |
| CG10895-PA | 1431 | lok-RA | 608..811 | 564..767 | 920 | 98 | Plus |
| CG10895-PB | 1380 | lok-RB | 557..760 | 564..767 | 920 | 98 | Plus |
| CG10895-PC | 1380 | lok-RC | 557..760 | 564..767 | 920 | 98 | Plus |
| CG10895-PA | 1431 | lok-RA | 1..136 | 9..144 | 605 | 97.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:37:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lok-RD | 2310 | CG10895-RD | 381..1145 | 9..772 | 3650 | 98.6 | Plus |
| lok-RC | 2163 | CG10895-RC | 381..1145 | 9..772 | 3650 | 98.6 | Plus |
| lok-RB | 2105 | CG10895-RB | 320..1084 | 9..772 | 3650 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:37:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 20062732..20063095 | 410..772 | 1680 | 98.1 | Plus |
| 2L | 23513712 | 2L | 20062147..20062306 | 144..303 | 785 | 99.4 | Plus |
| 2L | 23513712 | 2L | 20061877..20062012 | 9..144 | 635 | 97.8 | Plus |
| 2L | 23513712 | 2L | 20062542..20062653 | 300..411 | 560 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:37:41 has no hits.
MXO03579.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:43:52 Download gff for
MXO03579.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10895-PB | 1..765 | 9..772 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:48:10 Download gff for
MXO03579.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lok-RB | 312..1084 | 1..772 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:13:49 Download gff for
MXO03579.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lok-RB | 312..1084 | 1..772 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:13:49 Download gff for
MXO03579.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 20061869..20062012 | 1..144 | 95 | -> | Plus |
| 2L | 20062148..20062305 | 145..302 | 99 | -> | Plus |
| 2L | 20062545..20062653 | 303..411 | 100 | -> | Plus |
| 2L | 20062734..20063095 | 412..772 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:48:10 Download gff for
MXO03579.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 20062148..20062305 | 145..302 | 99 | -> | Plus |
| arm_2L | 20062545..20062653 | 303..411 | 100 | -> | Plus |
| arm_2L | 20061869..20062012 | 1..144 | 95 | -> | Plus |
| arm_2L | 20062734..20063095 | 412..772 | 98 | | Plus |
