MXO03580.5prime Sequence
871 bp (609 high quality bases) assembled on 2007-07-18
> MXO03580.5prime
CAGTCGACATGAGGCAACTGGCGAGCATTTTGTTGCTGGCATTTGTCGTG
GGCAGCGTTAGTGCCTTCTATTCGCCCAGCGATGGCGTTGTGGAGCTGAC
GCCCTCGAATTTCGACCGGGAGGTGCTGAAAGACGACGCCATCTGGGTCG
TGGAGTTCTATGCTCCATGGTGCGGCCATTGTCAGAGCCTGGTGCCCGAG
TACAAGAAGCTGGCCAAGGCATTGAAGGGAGTCGTGAAAGTGGGCTCCGT
GAATGCCGATGCGGACAGCACGCTGAGTGGCCAGTTCGGTGTACGTGGCT
TTCCCACCATCAAGATCTTTGGCGCCAACAAGAAGTCGCCCACGGACTAC
AATGGTCAGCGAACCGCTAAGGCCATCGCTGAAGCCGCTCTGGCGGAGGT
CAAGAAGAAGGTGCAGGGTGTCCTGGGCGGCGGCGGTGGATCGTCTTCCG
GCGGTTCCGGCAGCTCGTCCGGCGATGATGTCATCGAACTCACCGAGGAC
AACTTTGACAAACTGGTCCTGAACTCCGACGACATATGGCTGGTGGAATT
CTTCGCCCCCTGGTGTGGTCACTGCAAGAACCTGGCACCCGAATGGGCCA
AGGCCGCCAAAGAATTGAAGGGCAAGGTTAAGTTGGGCGCCCTGGATGCC
ACCGCGCATCAGAGCAAGGCCGCCGAATACAATGTGCGTGGGTATCCTAC
CATTAAGTTCTTCCCTGCGGGCTCCAAGCGAGCCAGTGATGCCCAGGAGT
ATGATGGCGGACGCACTGCCTCGGATATTGTATCCTGGGCCAGTGACAAG
CATGTGGCCAATGTGCCAGCACCCGAACTCATCGAGATTATCAATGAATC
GACTTTTGAAACTGCCTGCGA
MXO03580.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:43:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5809-PA | 1302 | CaBP1-RA | 1..863 | 9..871 | 4315 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:57:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CaBP1-RB | 1781 | CG5809-RB | 184..1046 | 9..871 | 4315 | 100 | Plus |
| CaBP1-RA | 1723 | CG5809-RA | 184..1046 | 9..871 | 4315 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:57:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 16355621..16356471 | 871..21 | 4255 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:57:24 has no hits.
MXO03580.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:43:57 Download gff for
MXO03580.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5809-PA | 1..862 | 9..870 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:47:05 Download gff for
MXO03580.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CaBP1-RA | 178..1045 | 2..870 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:32:09 Download gff for
MXO03580.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CaBP1-RA | 178..1045 | 2..870 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:32:09 Download gff for
MXO03580.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 16355622..16356470 | 22..870 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:47:05 Download gff for
MXO03580.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 16355622..16356470 | 22..870 | 100 | <- | Minus |
