MXO03581.5prime Sequence
878 bp (779 high quality bases) assembled on 2007-07-18
> MXO03581.5prime
CAGTCGACATGGCAAGCGAAGTGGCCCAAATACCCGCCGAGGAAACGCCC
GCAGTGGCGGCGGCGGAAAAATCAGAGGAGCCGGAAAAGTCAGCGGCCCC
GCCAGCGGACTCAGCGGCCGCTCCAGCTGCCGCCCCCGCAGTGGAGAAGG
CTGAGGATGCCGATGGCGAGAAGAAGGACGGCGAGGCCGGAAAGCAGGAC
AAGCAGCAGGATGGCGAGGAGCCCAAAAAGGACGAGGCGGTGGCAGCACC
CGTGGCGACCAAATCGGAAGCCCCGCCCGCCCAGAAATTCAATGTGCACA
AGACCAACTTCGAGAAGGACATCATCTATCTGTACCAGTTCTCGCGCACC
CCACTGCTGCCCTCCCTGTCGCCCTACTGCCTGAAGGTGGAGACCTGGCT
GCGTCTTGTGGGCCTGAAATACGAGAATGTCGATCATAAGATGCGTTTCC
GCTCCAAGAAGGGTCAGCTGCCGTTCATCGAGCTGAATGGGGAGGAAATC
GCCGATTCGGCCATCATCATCAAGGAACTGTCGTCCAAATACGAGAAGTA
CCTGGACTCGGGACTCACCGCCGAGCAAAGGAATGTCTCGTACGCCACGA
TTGCCATGCTGGAGAACCATCTCATCTGGATCATCTTCTACTGGCGCGCC
AAGTATCCGGACAATGTGCTCAAGGGCTACAAGGTCAACTTGCAGCACGC
CCTCGGCCTGCGGCTGCCCAACTCGATTCTGAACTTCTTCTTTAAGATCA
CCTTTGGTCGCAAGTGGTTCCAGGGCACGAAGAAGCTGAAGGCGCACGGC
ATCGGTGTCCACAGCGCCGAGGAGATCGAGGAGTTCGGCAAGGACGACCT
GAAGGTGCTCAGCGAGATGCTCGACTGC
MXO03581.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:44:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4609-PA | 1257 | fax-RA | 1..870 | 9..878 | 4350 | 100 | Plus |
| CG4609-PC | 1248 | fax-RC | 1..756 | 9..764 | 3780 | 100 | Plus |
| CG4609-PB | 849 | fax-RB | 10..462 | 426..878 | 2265 | 100 | Plus |
| CG4609-PD | 840 | fax-RD | 10..348 | 426..764 | 1695 | 100 | Plus |
| CG4609-PC | 1248 | fax-RC | 755..861 | 772..878 | 535 | 100 | Plus |
| CG4609-PD | 840 | fax-RD | 347..453 | 772..878 | 535 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:37:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fax-RA | 3988 | CG4609-RA | 406..1280 | 4..878 | 4360 | 99.9 | Plus |
| fax-RC | 3153 | CG4609-RC | 362..1227 | 4..878 | 4215 | 98.9 | Plus |
| fax-RF | 3218 | CG4609-RF | 58..510 | 426..878 | 2265 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:37:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16411002..16411423 | 425..4 | 2095 | 99.8 | Minus |
| 3L | 28110227 | 3L | 16407021..16407361 | 764..424 | 1705 | 100 | Minus |
| 3L | 28110227 | 3L | 16405732..16405849 | 878..761 | 590 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 22:37:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gypsy3 | 6973 | gypsy3 GYPSY3 6973bp | 4503..4564 | 588..650 | 114 | 66.7 | Plus |
MXO03581.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:44:04 Download gff for
MXO03581.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4609-PA | 1..870 | 9..878 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:48:14 Download gff for
MXO03581.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fax-RA | 413..1291 | 1..878 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:13:55 Download gff for
MXO03581.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fax-RA | 402..1280 | 1..878 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:13:55 Download gff for
MXO03581.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16405732..16405845 | 765..878 | 100 | <- | Minus |
| 3L | 16407021..16407359 | 426..764 | 100 | <- | Minus |
| 3L | 16411002..16411424 | 1..425 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:48:14 Download gff for
MXO03581.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16398832..16398945 | 765..878 | 100 | <- | Minus |
| arm_3L | 16400121..16400459 | 426..764 | 100 | <- | Minus |
| arm_3L | 16404102..16404524 | 1..425 | 99 | | Minus |
