MXO03586.5prime Sequence
881 bp (794 high quality bases) assembled on 2007-07-18
> MXO03586.5prime
CAGTCGACATGACCGAGGAAAGCAAGAAGATCGTACAGCTGGACGACGTG
CAGCGCCAGTTGCTGGATCATCTGGCCAAGAATGACACCAGTGGATTCAA
GCAGCTGCTGAGCGGAGTGAGGAATGTTAATTTCGTGGACGACACCGGGA
TGTCGTGTTTGGCCCACGCCAGCTTCAAGGGAAACCGCGAGGCGGTGCAG
CTGCTCCTGGACATGGGTGCCGACATAAACCTCAATCAGCATGGAGCTGA
TTATACGCCACTGCATTTCGCCGCTCTATCGGGCAATACACATGTGTGCC
GGCTTCTTTTGGATGCTGGCATCAAGCCGGGTAGCATCAATAGTGTCAAC
AGGACCGCCGCCCAAATGGCCGCCTTTGTGGGCAACCACGCCTGCGTGGA
GACCATCAACAACTATGTGACCCAGTCGAGTTTGGAGTACTACACCCAAG
TGCATGGCCAGCAGACGGAGCCGCATATACCACCCAGCTTACTCAAATCG
TTCCACGCCTTTGTCACCGAAATCAACCTGCATCCCGTGAGGATTGCCCT
GAATGTGCAGTCCTTGGGATTGCTTAGGATCCTGTCCAGTCTGCGCAAGA
CGCTGGCTTTGATGTGCGAAAAGGAGATGCAGAAGTCGCATGACCTCAAC
GAGCTGCTGGCCTTCAAGTTCCATTATCAGGGCTGGATTTTGGCCGAACT
AATACGCTGCGAGGAGCAATTCAAGGCGCAGCACAAGGAGAAAAGTGGCG
AGGAGGCGGGCGATGCGAACAAGAACGATTTCATCGAGATGTTTGTGAAG
CGGGTGCTCAAGGAGAACAAGCTGGGCCAGCTGGACTATGTGGAATACAC
GTTGCGCGAATGTGCCAGGGAGTTTCCCGTG
MXO03586.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:44:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8003-PA | 1224 | CG8003-RA | 1..873 | 9..881 | 4365 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:01:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8003-RB | 1555 | CG8003-RB | 101..973 | 9..881 | 4365 | 100 | Plus |
| CG8003-RA | 1368 | CG8003-RA | 101..973 | 9..881 | 4365 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:01:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 10661849..10662515 | 215..881 | 3335 | 100 | Plus |
| 3L | 28110227 | 3L | 10661575..10661782 | 9..216 | 1040 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:01:17 has no hits.
MXO03586.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-08-06 12:44:32 Download gff for
MXO03586.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8003-PA | 1..873 | 9..881 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:42:00 Download gff for
MXO03586.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8003-RA | 92..973 | 1..881 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:57:01 Download gff for
MXO03586.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8003-RA | 92..973 | 1..881 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:57:01 Download gff for
MXO03586.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 10661566..10661781 | 1..215 | 98 | -> | Plus |
| 3L | 10661850..10662515 | 216..881 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:42:00 Download gff for
MXO03586.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 10654666..10654881 | 1..215 | 98 | -> | Plus |
| arm_3L | 10654950..10655615 | 216..881 | 100 | | Plus |
